Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f14r
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom... 119 3e-28
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 30 0.32
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 5.2
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 6.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 6.8
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.8
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 6.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 9.0
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 9.0
>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 163
Score = 119 bits (287), Expect = 3e-28
Identities = 57/135 (42%), Positives = 85/135 (62%)
Frame = -1
Query: 627 GEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVANIGWCP 448
G+VV GFGRGSKELG PTAN + ++ L + + GVY+G+A V V+ MV ++GW P
Sbjct: 28 GKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-VFPMVMSVGWNP 86
Query: 447 FYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQIREDIKNSEQN 268
+Y+NK S E H++ DFY +++ ++GY+R E N+ LD LIE I DI+ + +
Sbjct: 87 YYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDIRVALNS 146
Query: 267 LKQPSAQSLRNHSFF 223
+ +PS S + FF
Sbjct: 147 MDRPSYSSYKKDPFF 161
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 29.9 bits (64), Expect = 0.32
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 357 LEQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQLEPIHNKHLAPNL 536
L+ + N HR CAL F++T + G+ D +L + P HI+ Q+ L +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689
Query: 537 LVKILQLPKD 566
L I + KD
Sbjct: 690 LTNINRYLKD 699
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 417 FQQTSLYFGKKDTILYLLPSHIQVLC 494
FQ + +F KK+ ++ + H Q+LC
Sbjct: 142 FQANTYFFKKKEDLIPFIEEHWQLLC 167
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 90 YCWFNFKRIDPQITSKEISKQFTSR 16
Y W++ KR Q+T + SK+ T+R
Sbjct: 22 YSWYSVKRWQSQLTFRNKSKRNTNR 46
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 420 ETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQI 298
ETHI H + + G KI ++ Y G N +E +
Sbjct: 1081 ETHIQHFIKKFYAGDEKKIPIVEYFGGVPPVNVSHKSLESV 1121
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 463 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 585
+C+ L+YR+ + ++ +L + + F R+ SC++S
Sbjct: 59 LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 414 HIMHNFQGDFYGSNLKIALIGYLRGEKNF 328
H+M +GD+ L++A G+L G+ +F
Sbjct: 277 HLMIPTKGDYVRQTLELAGFGFLPGDASF 305
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 342 GEKNFNCLDALIEQIREDIKNSEQNLKQPSAQSLRNHS 229
G + CL+ + +++ E I+NS N +P ++N+S
Sbjct: 439 GNQTMKCLE-IHQELSELIRNSSTNYLEPVEVRMQNYS 475
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = -1
Query: 525 PGVYYGWAQVDTGPVYEMVANIGWCPFYQNKEMSVETHIMHN 400
PGV+ G + TG + + ++ CP +++ I+ N
Sbjct: 80 PGVFEGIVNLTTGKIEKWEHSVDTCPIITADLLAITDEIVRN 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,304
Number of Sequences: 5004
Number of extensions: 55326
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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