Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f14f
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8) 66 2e-11
SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022) 28 5.7
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 28 7.5
SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26) 28 7.5
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 28 7.5
SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29) 27 9.9
SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28) 27 9.9
SB_47964| Best HMM Match : Abi_HHR (HMM E-Value=5) 27 9.9
SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 27 9.9
SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31) 27 9.9
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29) 27 9.9
SB_29625| Best HMM Match : zf-AN1 (HMM E-Value=8.4) 27 9.9
SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_45559| Best HMM Match : FAD_Synth (HMM E-Value=1.8)
Length = 714
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/58 (46%), Positives = 39/58 (67%)
Frame = +1
Query: 37 KELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPVYEMVANIGWCPFYQNKEMSV 210
++ C T NYP E+V L G+Y GWA VD GPVY+MV ++GW P+Y+N++ S+
Sbjct: 91 RKQSCKT-NYPEELVDQFGSSLGTGIYCGWASVDNGPVYKMVMSVGWNPYYKNEKKSM 147
>SB_38590| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
Length = 284
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -3
Query: 243 ITLEIVHYMGFNRHLFILVKRTPSYICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRI 64
+ + IV ++GF + ++L ++ Y+ Y + + ++P I +TF +
Sbjct: 195 LPISIVDFIGFGQGSWLLPRQV--YLMYTFLGQLSTTINPVIYGVMNKTFRDEYKRMLCS 252
Query: 63 ISCW 52
+SCW
Sbjct: 253 LSCW 256
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 283 LRGEKNFNCLDALIEQIREDIKNSEQNLKQPSAQSLR 393
LR EK LDA+ E++ E+ + E L+ QSLR
Sbjct: 312 LRKEKE-EALDAVREELEEEQEEKESRLRDEKEQSLR 347
>SB_59661| Best HMM Match : PMP22_Claudin (HMM E-Value=0.26)
Length = 680
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +1
Query: 61 NYPLEVVKSLPKGL-----EPGVYYGWAQVDTGPVYEMVANIGWC--PFYQNKEMSVETH 219
NYPL + L + +P Y+G + P+Y + N WC F++ + H
Sbjct: 564 NYPLGELTKLWEDFNSEESKPEDYWGKKDIRVKPIYGVSKN--WCCFKFHEPTVEDITQH 621
Query: 220 IMHNF 234
+ HNF
Sbjct: 622 VEHNF 626
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 179 HHPIFATISYTGPVST*AH--P**TPGSKPFGKDFTTSKG*LAVGHPSSLEPLPKPLTTS 6
H P +T S+T PVST +H P TP P +T V PS+ P+ P T
Sbjct: 389 HTPPVSTPSHTPPVSTPSHTPPVSTPSHTP---PVSTPSHTPPVSTPSNTPPVSTPSHTP 445
Query: 5 P 3
P
Sbjct: 446 P 446
>SB_49072| Best HMM Match : rve (HMM E-Value=2.7e-29)
Length = 307
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 60 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 104
>SB_48278| Best HMM Match : rve (HMM E-Value=7.1e-28)
Length = 307
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 60 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 104
>SB_47964| Best HMM Match : Abi_HHR (HMM E-Value=5)
Length = 275
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 135 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 179
>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1413
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 896 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 940
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 197 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 241
>SB_51971| Best HMM Match : rve (HMM E-Value=7.7e-31)
Length = 488
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 103 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 147
>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
Length = 361
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 114 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 158
>SB_29625| Best HMM Match : zf-AN1 (HMM E-Value=8.4)
Length = 126
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 377 EGCFKFCSEFFISSRICSMRASRQLKFFS 291
+GC FC EF +S IC + + F+S
Sbjct: 56 DGCCTFCREFSKASEICCGEDTLSVHFYS 84
>SB_29145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 289 GEKNFNCLDALIEQIREDIKNSEQNLKQPSA 381
G++ NCL +Q ++IK+SEQ L P A
Sbjct: 1018 GQRYHNCLQNEAKQKADNIKHSEQALITPEA 1048
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 271 EQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQ 134
E+ L+ H +HPG C + ++ L++ K D + + H + CQ
Sbjct: 1134 EKILHDLHADHPGMCRMKSLARSYLWWPKLDQAIENMVHHCEA-CQ 1178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,270,095
Number of Sequences: 59808
Number of extensions: 360282
Number of successful extensions: 924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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