Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f13r
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-1|AAB93314.3|  300|Caenorhabditis elegans Hypothetical pr...    29   0.47 
Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    26   5.8  

>U21308-1|AAB93314.3|  300|Caenorhabditis elegans Hypothetical
           protein ZK1290.7 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = -2

Query: 231 DLYYNIM*LMRRDFFYIIYYSLLTSRVPNVM 139
           DL Y +  ++++DF+Y I++++    +PN++
Sbjct: 196 DLIYFLKDVLKQDFYYSIWFNIFFDELPNML 226


>Z68215-3|CAA92452.3|  415|Caenorhabditis elegans Hypothetical
           protein C53B4.3 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 255 FYFMYYLHDLYYNIM*LMRRDFFYIIYYSLLTSRVPNVMFY 133
           F   Y LH  Y + +      +F   YYSLL SR+P V  +
Sbjct: 80  FGIRYALHLCYLSTLCSGLALYFSFDYYSLLLSRIPVVFMH 120


>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
 Frame = -2

Query: 204 MRRDFFYIIYYSLLTS-------RVPNVMFYIKIIKNSFVCNI 97
           +RR  F+I  Y L  +       R+PN    IKI+K  F C +
Sbjct: 134 VRRALFFIFNYLLAFTFVIPTILRIPNQSEAIKIVKEQFPCEV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,613,595
Number of Sequences: 27780
Number of extensions: 87768
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)