Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f13f
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   3.4  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   4.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   7.9  

>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 50  YFMYYLHDLYYN----IM*LMRRDFFYIIYYSLLTSRVPNVMFYIKIIKNSFVCNIKFTK 217
           YF +Y    ++N    I+    R   Y+I        + + MF+ K++ + +V     +K
Sbjct: 272 YFTFYEGSSWHNNDAGIILWANRHLAYVIVAGFCLYFILSYMFFSKLLDSRYVQRFVTSK 331

Query: 218 QESPT 232
           ++ PT
Sbjct: 332 RKQPT 336


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 47  FYFMYYLHDLYYNIM*LMRRDFFYIIYYSLLTSRVPN 157
           F F+YY+    Y    LMR  F    YY+L+  R  N
Sbjct: 398 FLFVYYMRYCTYKS--LMRTQFAPHYYYALVPFRATN 432


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 107  DFFYIIYYSLLTSRVPNVMFYIKIIKNSFVC 199
            DF  I    L+  +  N+++Y+K+   S +C
Sbjct: 1711 DFVKISSLMLIFGKQDNILYYVKLFYLSEIC 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,845
Number of Sequences: 5004
Number of extensions: 20681
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)