Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f13f
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0643 + 18328807-18331969,18332560-18332627                       27   4.1  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    26   7.2  
08_02_0841 - 21749599-21749978,21750409-21753367                       26   9.6  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     26   9.6  

>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 56  MYYLHDLYYNIM*LMRRDFFYIIYYSLLTSRVPNVMFYIKII-KNSFVC 199
           MY +HDL ++   L+ +D  +II +    +++P+ + ++ I  K +  C
Sbjct: 540 MYVIHDLIHDTAQLVSKDECFIIQHVSDLAKIPSKVRHLSIFTKGNISC 588


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 119  IIYYSLLTSRVPNVMFYIKIIKNSFVC 199
            I+Y  +LT R  +V ++I+++   F+C
Sbjct: 931  ILYLEILTYREQSVRWFIRVLMTVFLC 957


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 119 IIYYSLLTSRVPNVMFYIKIIKNSFVCNIKFT 214
           +IY +  T R+P V+  +K +KN  + N  FT
Sbjct: 383 LIYENSFTGRLPPVLAELKFLKNITLFNNFFT 414


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 56  MYYLHDLYYNIM*LMRRDFFYIIYYSLLTSRVPNVMFYIKIIKN 187
           +Y +HDL ++   L+ +D  +II +     ++P+ + ++ I  N
Sbjct: 540 IYVIHDLIHDTAQLVSKDECFIIQHVSDLPKIPSKVRHLSIFTN 583


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,856,921
Number of Sequences: 37544
Number of extensions: 96328
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)