Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f12r
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 55 9e-09
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ... 55 9e-09
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 30 0.28
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 30 0.38
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.0
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.0
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 27 2.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 3.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 4.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.6
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 6.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 26 6.1
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 8.1
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 25 8.1
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 8.1
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 55.2 bits (127), Expect = 9e-09
Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 14/184 (7%)
Frame = -1
Query: 680 NKSKSDDEKPVLEKLLDINEEYAYIMASDMLVAGVDTTSNTMSATLYLMAINQDKQQKLR 501
+++K EKP + + + ++E + L A D TS+ M+ L+A + D QK+R
Sbjct: 288 SENKEGAEKPSV-LIREFSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVR 346
Query: 500 EEVMS-KNG------------KRSYLRACIKEAMRILPVVSGNMRRTTKEYNIL-GYHIP 363
EE + + G K +Y RA +KE +R+ P V R K + I Y +P
Sbjct: 347 EEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVP 406
Query: 362 ENVDIAFAHQHLSMMEKYYPRPTEFIPERWLTNKSDPLYYGNAHPFANSPFGFGVRSCIG 183
++ + K YP P F P+RW N P FG G C+G
Sbjct: 407 KDAMVIPTLYGALHDSKVYPEPETFNPDRWAPNG-----LAEQSPKNWMVFGNGPHVCLG 461
Query: 182 RRIA 171
+R A
Sbjct: 462 QRYA 465
>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 495
Score = 55.2 bits (127), Expect = 9e-09
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 25/197 (12%)
Frame = -1
Query: 593 MLVAGVDTTSNTMSATLYLMAINQDKQQKLREE---VMSKNGKRSY--------LRACIK 447
+L+AG T++ T+ L L+ + + L EE V+ +N + + L I+
Sbjct: 285 LLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLELKFDQYKDMPLLNYVIQ 344
Query: 446 EAMRILPVVSGNMRRTTKEYNILGYHI--PENVDIAFAHQHLSMMEKYYPRPTEFIPERW 273
E +R+ P + +MR+ ++ + G I P N + A + E+Y+ T+F P+RW
Sbjct: 345 ETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHATDFDPKRW 404
Query: 272 -----LTNKSDPLYY-------GNAHPFANSPFGFGVRSCIGRRIAELEVETFLSKIVEN 129
++ + Y G A P+ PFG G CIG + A + + T +SK V +
Sbjct: 405 NDRVNEDENAEQIDYGYGLVTKGAASPYL--PFGAGRHRCIGEQFAYMHLSTIISKFVHD 462
Query: 128 FQVEWSGSSPRVEQTSI 78
+ G P V+ +S+
Sbjct: 463 YTWTLIGKVPNVDYSSM 479
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -1
Query: 449 KEAMRILPVVSGNMRRTTKEYNILGYHIPENVDIAFAHQHLSMMEKYY 306
K+A+ LP N+R Y ++ Y+IP VD AFA+ + +E Y+
Sbjct: 166 KQALLPLPGKQINVRSVVPFYKLMPYNIPFAVD-AFAYGAIDGVEAYF 212
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = -1
Query: 710 IKKALDDIKMNKSKSDDEKPVLEKLLDINEEYAYIMASDMLVAG--VDTTSNT-MSATLY 540
+ L ++ + S+S++ P+ E+++DI E YA+ + + G +DT +S L
Sbjct: 1164 VSSTLKNLTLRFSQSENVFPI-EQIIDITERYAFDQQGEAVATGWVIDTFLGAGVSHELI 1222
Query: 539 LMAINQ--DKQQK 507
+ +NQ D+++K
Sbjct: 1223 FIVLNQLYDRREK 1235
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 97 LGDDPDH--ST*KFSTIFDKNVSTSNSAMRRPIQLRTPKPNGEFAN 228
+ ++P H S+ K ST D N + S ++ ++ PKP+G+F N
Sbjct: 114 MSEEPKHHDSSNKESTNLD-NSNMDESENQKNFKIEEPKPSGDFRN 158
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = -1
Query: 689 IKMNKSKSDDEKPVLEKLLDINEEYAYI--MASDMLVAGVDTTSNTMSATLYLMAINQDK 516
I+ ++ + D + L K+LD +A + + + +A + + L + D+
Sbjct: 237 IRSSEFSARDVELELSKVLDSPVTHALVPELGLQLAMASCNALLRYLGPALLNPDMEDDR 296
Query: 515 QQKLREEVMSKNGKRSYLRACIK--EAMRILPVVSGNMRRTTKEYNILGY 372
+ R+ + + Y+R I ++ +LP +GN +T Y +L +
Sbjct: 297 ENTSRKLHLYHHNLEQYMRLDIAAVRSLNLLPPPNGNAHKTMSLYGLLNH 346
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 406 DAPQRSTTFLDIIYRKMSTLHLLINICR*WRNTIQDRRSSFLN 278
D + TF ++ +R + T HLL+N C ++D R L+
Sbjct: 86 DDELENETFSELPFRWLETAHLLLNFCADDIEDVEDIRRILLD 128
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.6
Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Frame = -1
Query: 641 KLLDINEEYAYIMASDMLVAGVDTTSN--TMSATLYLMAINQDKQQKLREEVMSKNGKRS 468
+L EE AY + +L G+ S +S + + ++Q Q+ E V+ + + +
Sbjct: 3146 RLKSFPEEDAYRLIVALLNDGLQYISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREA 3205
Query: 467 YLRACIKEAMRILPVVSGNMRRTTKEY-NILGYHIPENVDIAFAHQHLSMMEKYYPRPTE 291
+LR ++ + +L V +R K++ NIL P+ + + +LS + E
Sbjct: 3206 FLRDFVETKLDLLTYVD-KLRMWRKKFENILDQR-PKFLHLEQCSLYLSEFQHQKFDEVE 3263
Query: 290 FIPERWLTNKSD 255
IP ++L +K++
Sbjct: 3264 -IPGQYLLDKNN 3274
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -1
Query: 710 IKKALDDIKMNKSKSDDEKPVLEKLLDINEEYAYIMASDMLVAGVDTTSNTMSATLYLMA 531
+ ++ +K +S + V E EE+ + + + + V T N+ T+Y+
Sbjct: 549 VVRSRPSLKQRPLRSAEYVRVCELKCLQEEEFDNKVLLEQVESNVQTDHNSPCNTIYVGN 608
Query: 530 I-NQDKQQKLREEVMSKNGKRSYLRACIK 447
+ N D+++KLR ++ + ++ Y R C K
Sbjct: 609 LSNPDQEKKLR---LAFSKEKGYRRLCFK 634
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -1
Query: 626 NEEYAYIMASDMLVAGVDTTSNTMSATLYLMAINQDKQQKLREEVMSKNGKR 471
N+ ++ SD L+ D+T + + T+ + K LR + ++NGKR
Sbjct: 38 NDIDSFEQQSDFLLVDHDSTLDPVPVTILTGFLGAGKTSLLRSILENRNGKR 89
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 136 TIFDKNVSTSNSAMRRPIQLRTPKPNGEFA 225
TI K +S S + P+Q TP + E+A
Sbjct: 335 TIVSKTISASTTQQTEPLQQTTPSSDFEYA 364
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 136 TIFDKNVSTSNSAMRRPIQLRTPKPNG 216
T++DKN T ++A+R +R P NG
Sbjct: 114 TLYDKNPLTRSTAIRVMSSIRVPAING 140
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 293 EFIPERWLTNKSDPLYYGNAHPFANSPF 210
EF+PE WL ++ D + N + N F
Sbjct: 122 EFLPEEWLLSRLDCKFLENINVVPNGDF 149
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 275 SVQE*TPSVLDSISPSSTNVDEQMQCRHFPVYDIQECCTPL 397
SV + P V+D + S N+ + + D +ECC L
Sbjct: 393 SVNDEKPQVIDQTNASLVNLRKSIYLTIMSSVDFEECCHKL 433
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 579 CRYHFKHDVRNFV 541
C+Y F+HD+ NF+
Sbjct: 228 CKYEFEHDMENFM 240
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 176 IAELEVETFLSKIVENFQVEWSGSSPRVEQTSINYFKGPFNFIFK 42
+ EL +E ++ ++ ++V+ PRV K PF+++ K
Sbjct: 520 MGELHLEVYVERMRREYKVDCETGKPRVAFRETLSKKVPFSYLHK 564
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 597 RHAGGWCRYHFKHDVRNFVPHGDKSGQTA 511
+HA G Y K D N++ H DK+G TA
Sbjct: 460 KHASGNNGYMLK-DFINYLNHQDKNGDTA 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,399
Number of Sequences: 5004
Number of extensions: 68966
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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