Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f12f
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   2.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   5.1  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   6.8  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   9.0  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 308 LQTREIQH-RSQFTVMQGYYHVNN*MSILFNKKINTPQSKRVSLRR 174
           L+ ++I H R + T   GYYH+    +++    +   QS  +SL++
Sbjct: 403 LRRKDIDHYRREITQTYGYYHLLTFQALIDAGLLRLRQSTNISLQK 448


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 430 KCRNGPMIGNDEGPGISRNDFNSVCCSFSVAALTVTV 320
           K  N     NDE P + +ND  SV  S S    ++++
Sbjct: 27  KRNNANTASNDEKPNLEQNDIPSVTSSGSSTPSSISI 63


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 418 RFYTSCPEDPFTTLTARN*LTNCTTYTDLSLES 516
           R+Y   PED  T L A +   N  T    SLE+
Sbjct: 274 RYYDLTPEDEMTNLCANSIYQNLQTSAQGSLEA 306


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 6   YNLCSNRRNAFLDFRLNKINKKIKFLFV 89
           YNLC N++ AF+   L+ + ++ + +FV
Sbjct: 113 YNLCLNQKIAFVLVMLHFMKREYESIFV 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,738
Number of Sequences: 5004
Number of extensions: 34311
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)