Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f12f
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0827 - 6664723-6665346,6666636-6667559 30 0.97
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 29 2.2
08_02_0983 - 23281787-23281931,23282045-23282163,23282765-232828... 29 3.0
10_05_0014 + 8018021-8019049 28 3.9
12_01_0629 - 5183504-5184970 28 5.2
10_02_0087 - 5120498-5120704 28 5.2
09_01_0168 + 2448444-2448818,2448919-2449408,2450664-2450857 28 5.2
11_06_0565 - 25031089-25031443,25031541-25031692 27 9.0
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 27 9.0
04_01_0404 - 5297341-5297970,5298304-5299179 27 9.0
01_05_0356 - 21338488-21340062 27 9.0
>07_01_0827 - 6664723-6665346,6666636-6667559
Length = 515
Score = 30.3 bits (65), Expect = 0.97
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 387 PGPSSLPIMGPFLHFMPGG-SLH 452
PGPS+LP++G HF+P S+H
Sbjct: 38 PGPSTLPLIGSIHHFVPSSESVH 60
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3
Query: 387 PGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPIVRI 515
PGPS+LP++G HF+ S +++S + +L +GP++++
Sbjct: 38 PGPSTLPLIGSIHHFV--SSSESVHS--VMRRLAREHGPVMQL 76
>08_02_0983 -
23281787-23281931,23282045-23282163,23282765-23282871,
23284392-23284470,23285054-23285143,23285259-23285531,
23285617-23285769,23285969-23286290,23286428-23286672
Length = 510
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 354 QQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIY 497
Q+ + F+ P PS+ G +H PG L + L H+L Y
Sbjct: 415 QKFDPSRFKVAPRPSTFLPFGSGVHACPGNELAKLEMLVLVHRLVTAY 462
>10_05_0014 + 8018021-8019049
Length = 342
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 387 PGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPIVRI 515
PGP P++G GG H + H++ +YGP++R+
Sbjct: 43 PGPRGWPVLGNLPQL--GGKTH-----QTLHEMTKVYGPLIRL 78
>12_01_0629 - 5183504-5184970
Length = 488
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 387 PGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPIVRI 515
PGP +LPI+G L + GG+LH+ L H +GP++ +
Sbjct: 32 PGPRTLPIVGNLLD-LRGGNLHH-KLASLAH----AHGPVMTL 68
>10_02_0087 - 5120498-5120704
Length = 68
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 315 VRTVTVSAATEKLQQTELKSFREIPGPSSLPIMGPFLHFM 434
+R V V T++ + E R +PG LPI+G L F+
Sbjct: 12 IRLVFVKGNTDR-RPCEADGMRMVPGSRGLPIIGETLEFL 50
>09_01_0168 + 2448444-2448818,2448919-2449408,2450664-2450857
Length = 352
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 433 MKCRNGPMIGNDEGPGISRNDFNSVCCSFS 344
M C IGN + PG D+N+V SF+
Sbjct: 221 MGCLPAERIGNRDNPGECNEDYNAVARSFN 250
>11_06_0565 - 25031089-25031443,25031541-25031692
Length = 168
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 367 NSVCCSFSVAALTVTVLTHCCRH 299
+++ C+F+ AA++V VLT RH
Sbjct: 142 SAIICAFAAAAVSVAVLTKGARH 164
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 299 VSAAMCENSDS*RGNRKTTTNRIEIVSRDSGPLVVADH 412
+ + +C+N+ RG+R T RIE V++ P + H
Sbjct: 200 IQSVLCDNN---RGSRIIVTTRIEAVAKACSPAIGGHH 234
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 288 LNFSCLQQCVRTVTVSAATEKLQQTELKSFREIPGPSSLPIMGPFLHFM 434
+N V VT+ L + R PGP +LP++G LH +
Sbjct: 3 INSEATVTLVSVVTLPILLALLTRKSSSKKRRPPGPWNLPLVGGLLHLL 51
>01_05_0356 - 21338488-21340062
Length = 524
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 387 PGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPIVRI 515
PGP+ LP++G L + GG +H + L +YGP++ I
Sbjct: 41 PGPTPLPLIGNLLD-LRGGVIH-----DKLAALARVYGPVMMI 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,720
Number of Sequences: 37544
Number of extensions: 194464
Number of successful extensions: 536
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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