Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f12f
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  38   0.005
SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)                  29   2.3  
SB_25359| Best HMM Match : p450 (HMM E-Value=0)                        29   3.0  
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        27   7.0  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                27   9.3  
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)                 27   9.3  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.3  
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         27   9.3  
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 327 TVSAATE-KLQQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGP 503
           TVSA  + +L + +++ F EIPGP +LP +G    +M            +  KL+D YGP
Sbjct: 27  TVSATEDTRLFEKDVRPFEEIPGPIALPYVGSVHRYMSEKDGFK-KMFRVQKKLFDEYGP 85

Query: 504 IVR 512
           I +
Sbjct: 86  IYK 88


>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 339 ATEKLQQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPIVR 512
           A E     +++ F+EIPGP  LP +G    ++  G    ++   L    +  YGPI +
Sbjct: 47  AYENHDAMDIRPFQEIPGPKGLPWIGSIHDYILKGGFSKLHL--LRQSYFKRYGPIYK 102


>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 363 ELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLY-DIYGPIVR 512
           +++ F+EIPGP  LP +G    ++  G    ++   L H+ Y   YGPI +
Sbjct: 2   DIRPFQEIPGPKGLPWIGSIHGYILKG---GVSKLHLLHQSYFKKYGPIYK 49


>SB_20482| Best HMM Match : p450 (HMM E-Value=4.6e-28)
          Length = 473

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 381 EIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPI 506
           ++PGP+ LP +G  +  +  G    +   E T K   +YG I
Sbjct: 47  DVPGPNHLPFIGNLMDSIKHGGDLRLQFIEYTRKFGRVYGLI 88


>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 303 LQQCVRTVTVSAATEKLQQTELKSFREIPGPSSL 404
           +  C  + T S ++ +   T +KS  EIPGP+ +
Sbjct: 573 ISYCYGSKTYSTSSSRSTSTRVKSLSEIPGPAKM 606


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 19/76 (25%), Positives = 34/76 (44%)
 Frame = +3

Query: 282 PVLNFSCLQQCVRTVTVSAATEKLQQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNIN 461
           P+       + V+   ++ A EK ++T L+ FR +P P+ L     F H         ++
Sbjct: 415 PLFTDELYDKFVKAYAMADAEEK-RETMLELFRSLPTPNRLTACYLFQHLRKVAEKSEVH 473

Query: 462 STELTHKLYDIYGPIV 509
              L + L  ++GP V
Sbjct: 474 KMGL-NNLSTVFGPNV 488


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 267 YSKLRPVLNFSCLQQCVRTVTVSAATEKLQQTELKSFRE 383
           Y K      FS L+ C+R     A  E+ +QTE+   RE
Sbjct: 714 YMKALKTKKFSKLEFCLRHPYTIALVERAEQTEIADARE 752


>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 85  NKNLIFLFILFNRKSRKALRLFEHKLY 5
           NK L+F  IL N+  +K  + +EHK +
Sbjct: 461 NKELVFKTILLNKCQKKFDKTYEHKTH 487


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 345 EKLQQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYGPI 506
           +K ++    +F  + GP   P+  PFL F+P  + H+     L  K Y +YG +
Sbjct: 40  QKTERAIRNTFPHLRGPK--PV--PFLGFLPEFAKHSNGIHLLLDKYYKLYGRV 89


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 386  SGPLVVADHGPVSTLHARRIPSQH*QHGTDSQTVRHIRTY 505
            SGPL +A+H P  T     I +      + S  + H+  Y
Sbjct: 1631 SGPLNIAEHSPSGTYIGTLITADQDVRQSHSYNIEHVTAY 1670


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 327 TVSAATEKLQQTELKSFREIPGPSSLPIMG 416
           TV+ AT K +   + +F +IPGP  LP++G
Sbjct: 712 TVNNATNKPET--ILAFDQIPGPPCLPLLG 739


>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -2

Query: 433 MKCRNGPMIGNDEGPGISRNDFNSVCCSFSVAALTVTVLTH 311
           ++CR GPM     G  ++   F +V  + ++ +  +  +TH
Sbjct: 64  LQCRRGPMTARSRGLSVTSWMFLTVSSTLALCSFVILSVTH 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,837,561
Number of Sequences: 59808
Number of extensions: 248333
Number of successful extensions: 711
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)