Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f12f
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450...    29   1.5  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z48717-5|CAA88610.1|  519|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450
           family protein 44A1 protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 360 TELKSFREIPGPSSLPIMGP---FLHFMPGGSLHNINSTELTHKLYDIYGPIVR 512
           T  ++F EIPGP  +P++G    F + +   +    N  +   ++Y  YG IV+
Sbjct: 25  TPPRTFSEIPGPREIPVIGNIGYFKYAVKSDAKTIENYNQHLEEMYKKYGKIVK 78


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 293 FLVSAAMCENS--DS*RGNRKTTTNRIEIVSRDSGPLVVADHGPVSTLHAR 439
           FLV++ +CE +  ++   N  +    +  V+RD G +VVA    VST+ A+
Sbjct: 8   FLVASVLCEFNLTETLAKNESSPLVDLSKVARDQGAIVVAAFPAVSTIKAK 58


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 293 FLVSAAMCENS--DS*RGNRKTTTNRIEIVSRDSGPLVVADHGPVSTLHAR 439
           FLV++ +CE +  ++   N  +    +  V+RD G +VVA    VST+ A+
Sbjct: 8   FLVASVLCEFNLTETLAKNESSPLVDLSKVARDQGAIVVAAFPAVSTIKAK 58


>Z48717-5|CAA88610.1|  519|Caenorhabditis elegans Hypothetical
           protein T10B9.8 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 REIPGPSSLPIMGPFLHFMPGGSLHNINSTELTHKLYDIYG 500
           R + GP   P++G FL+ +       +   E T K   IYG
Sbjct: 30  RGVVGPMGFPVLGVFLNSLDNNFPFPLQCREWTKKFGKIYG 70


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 408 IMGPFLHFMPGGSLHNINSTELTHKLYDIY 497
           +  PF +F+   SL NI+   LTH LY  Y
Sbjct: 585 VTDPFHNFVDLCSLSNISVLSLTHSLYGYY 614


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 176 RMTRAKLILKVNFYLITMLTLKLCIE*R*YEQKFDFF 66
           ++T   L  K N  LI++L+ K C   R   Q FDFF
Sbjct: 557 KLTYLNLTRKKNCLLISILSPKTCFYVRVLLQSFDFF 593


>AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical
           protein K07D4.4 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 252 IIALHYSKLRPVLNFSCLQQCVRTVTVSAATEKLQQTELKSFREIPGP 395
           + + H   LRP   F  +   ++TV  S  TEK +    +   E+P P
Sbjct: 133 LFSSHIVALRPDYTFWKMVNVLKTVFDSRQTEKRRGPTRREIEEVPAP 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,664
Number of Sequences: 27780
Number of extensions: 197357
Number of successful extensions: 502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)