Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f12f
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.47 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   3.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 363 ELKSFREIPGPSSLPIMG 416
           + K+  ++PGP SLPI G
Sbjct: 46  KFKTVSKVPGPFSLPIFG 63


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 303 LQQCVRTVTVSAATE-KLQQTELKSFREIPGPSSLPIMGPFLHFMPGGSLHNINSTELTH 479
           L  C RT T++AAT+ +L   + + F+ I   + L     +  F+    +      E   
Sbjct: 171 LYNCKRTATITAATDCQLWAIDRQCFQTIMMRTGLSRQAEYTDFLKSVPIFKNLPEETLI 230

Query: 480 KLYDI 494
           K+ D+
Sbjct: 231 KISDV 235



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 418 RFYTSCPEDPFTTLTARN 471
           RFYT+C  + F  L +RN
Sbjct: 469 RFYTACVVEAFDYLHSRN 486


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 366 LKSFREIPGPSSLPIMG 416
           L+   +IPGP +LP++G
Sbjct: 38  LELAEKIPGPPALPLIG 54


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 345 EKLQQTELKSFREIPGPSSLPIMGPFLHFMP 437
           +KLQ   +    +IP P  +P+   + +F+P
Sbjct: 98  KKLQYYNINYIEQIPVPVPIPVPVYYGNFLP 128


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -2

Query: 421 NGPMIGNDEGPGISRNDFNSVCCSFSVAALTVTVLTHCCRHE 296
           NG ++  ++  G++    N    ++  +   +T LT C R E
Sbjct: 137 NGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 357 QTELKSFREIPGPSSLPIMGP 419
           Q  L   ++ P PS  P++GP
Sbjct: 872 QQPLNLSKKSPSPSPRPLVGP 892


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,014
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)