Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f11r
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633     81   1e-15
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577     79   3e-15
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519...    28   6.4  

>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
          Length = 171

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = -1

Query: 718 WXKGKPVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQ 569
           W KGK ++E + +KNT+IAK LSLPPVKLHCSMLAEDAIKAA+ DY  K+
Sbjct: 108 WVKGKQMEEVVTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKK 157


>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
          Length = 172

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = -1

Query: 718 WXKGKPVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQTENK 554
           W KGK +++A  +KN++IAK LSLPPVKLHCSMLAEDAIKAA+ DY  K+   +K
Sbjct: 115 WVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKKAKLDK 169


>02_04_0314 -
           21950400-21950639,21951384-21951680,21951791-21951920,
           21952377-21952699,21953385-21953606,21953693-21954089,
           21954488-21954540
          Length = 553

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 676 NTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQTEN 557
           + D+A    LPP  + C ++ ED   A L   R+  + EN
Sbjct: 282 SVDLAMLAGLPPAAVLCEIVDEDGSMARLPKLRVFAEREN 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,819
Number of Sequences: 37544
Number of extensions: 238289
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)