Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f11r
         (718 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p pro...    95   8e-20
AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA ...    95   8e-20
U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription ...    29   6.3  
L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.     29   6.3  
AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p pro...    29   6.3  
AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA...    29   6.3  
BT025105-1|ABE73276.1|  358|Drosophila melanogaster IP10818p pro...    29   8.4  

>AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p
           protein.
          Length = 154

 Score = 95.1 bits (226), Expect = 8e-20
 Identities = 43/51 (84%), Positives = 47/51 (92%)
 Frame = -1

Query: 718 WXKGKPVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQ 566
           W KGK +DEA KLKNTDIAKEL LPPVKLHCSMLAEDAIKAAL+DY++KQQ
Sbjct: 99  WVKGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQ 149


>AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA
           protein.
          Length = 154

 Score = 95.1 bits (226), Expect = 8e-20
 Identities = 43/51 (84%), Positives = 47/51 (92%)
 Frame = -1

Query: 718 WXKGKPVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQ 566
           W KGK +DEA KLKNTDIAKEL LPPVKLHCSMLAEDAIKAAL+DY++KQQ
Sbjct: 99  WVKGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALADYKVKQQ 149


>U06458-1|AAC47347.1|  278|Drosophila melanogaster transcription
           initiation factorTFIID 42 kDa subunit protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 703 PVDEALKLKNTDIAKELSLPPVKLHCSM-LAEDAIKAALSDYRIKQQTENKE 551
           P++  +  K  D+   + LPP+K HC + L  D       +Y+++   + K+
Sbjct: 92  PLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKK 143


>L29540-1|AAA28488.1|  278|Drosophila melanogaster TAFII40 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 703 PVDEALKLKNTDIAKELSLPPVKLHCSM-LAEDAIKAALSDYRIKQQTENKE 551
           P++  +  K  D+   + LPP+K HC + L  D       +Y+++   + K+
Sbjct: 92  PLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKK 143


>AY061338-1|AAL28886.2|  274|Drosophila melanogaster LD26511p
           protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 703 PVDEALKLKNTDIAKELSLPPVKLHCSM-LAEDAIKAALSDYRIKQQTENKE 551
           P++  +  K  D+   + LPP+K HC + L  D       +Y+++   + K+
Sbjct: 88  PLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKK 139


>AE014298-2613|AAF48767.3|  278|Drosophila melanogaster CG6474-PA
           protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 703 PVDEALKLKNTDIAKELSLPPVKLHCSM-LAEDAIKAALSDYRIKQQTENKE 551
           P++  +  K  D+   + LPP+K HC + L  D       +Y+++   + K+
Sbjct: 92  PLERHVLAKVADVRNSMPLPPIKPHCGLRLPPDRYCLTGVNYKLRATNQPKK 143


>BT025105-1|ABE73276.1|  358|Drosophila melanogaster IP10818p
           protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  LLTNIFLWLLDKINNCKN 128
           L + +F WL+ KINNC N
Sbjct: 284 LYSKMFTWLVSKINNCTN 301


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,531,068
Number of Sequences: 53049
Number of extensions: 477102
Number of successful extensions: 846
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)