Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f11f
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633 208 3e-54
05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577 204 5e-53
03_05_0679 + 26678131-26679204 36 0.036
01_06_1140 - 34836967-34836996,34837107-34838771 30 1.4
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579 29 2.4
08_01_0553 - 4846808-4847029,4847131-4847748 29 3.2
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845 26 3.7
01_06_1493 + 37753816-37755558 26 4.9
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 28 5.5
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161... 27 9.7
>01_06_0152 - 27041070-27041217,27041939-27041993,27043321-27043633
Length = 171
Score = 208 bits (508), Expect = 3e-54
Identities = 103/149 (69%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Frame = +1
Query: 94 LINGIRRCMCLKGFGSPNVILAAP-YHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPAC 270
L G+RR + G +P + A YH V+DHYENPRNVGS + D +VGTGLVGAPAC
Sbjct: 10 LAPGLRRVLG-GGAAAPVAVGGAKAYHERVVDHYENPRNVGSFENDDPSVGTGLVGAPAC 68
Query: 271 GDVMKLQIKVDEN-GKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKE 447
GDVMKLQI+VDE+ GKIVDA FKTFGCGSAIASSS+ATEWVKGK ++E + +KNT+IAK
Sbjct: 69 GDVMKLQIRVDESSGKIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVVTIKNTEIAKH 128
Query: 448 LSLPPVKLHCSMLAEDAIKAALSDYRIKQ 534
LSLPPVKLHCSMLAEDAIKAA+ DY K+
Sbjct: 129 LSLPPVKLHCSMLAEDAIKAAVKDYEAKK 157
>05_07_0155 + 28069592-28069925,28071072-28071126,28072448-28072577
Length = 172
Score = 204 bits (498), Expect = 5e-53
Identities = 95/135 (70%), Positives = 114/135 (84%), Gaps = 1/135 (0%)
Frame = +1
Query: 148 VILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDE-NGKIVD 324
V+ YH V+DHY+NPRNVG+ DK D +VGTGLVGAPACGDVMKLQI+VDE +G+IVD
Sbjct: 35 VVRRRGYHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVD 94
Query: 325 AKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 504
A FKTFGCGSAIASSS+A+EWVKGK +++A +KN++IAK LSLPPVKLHCSMLAEDAIK
Sbjct: 95 ACFKTFGCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIK 154
Query: 505 AALSDYRIKQQTENK 549
AA+ DY K+ +K
Sbjct: 155 AAVKDYEAKKAKLDK 169
>03_05_0679 + 26678131-26679204
Length = 357
Score = 35.5 bits (78), Expect = 0.036
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -2
Query: 455 KDSSLAISVFFNFSASSTVFPLTHSVAREL-EAIAEPHPKVLNLASTIFPFSSTLICNFI 279
+ +S SV F+F ASS+ P + REL + + P +LA ++PF + + I
Sbjct: 86 RHASCPESVHFHFLASSSSSPEAAAAVRELRDTVRASFP---SLAFRVYPFDESRVAGLI 142
Query: 278 TSPHAGAPTRPVPTFLSFLS 219
++ GA RP+ S+L+
Sbjct: 143 STSIRGALDRPLNYARSYLA 162
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 262 PACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 423
PAC LQ+ + +G IV + G + A ++L + K +DEA ++
Sbjct: 314 PACAQTAALQVGREVHGYIVTSGLACHGALDSFACNALVDMYAKSGALDEARRI 367
>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
Length = 234
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 458 GKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 339
G ++ L + +TV+P H REL I + HPK
Sbjct: 7 GSNTLLKSDSILEYVLDTTVYPREHERLRELRLITQNHPK 46
>08_01_0553 - 4846808-4847029,4847131-4847748
Length = 279
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 226 KDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASS 369
K ++VGT AP+ + ++ I VD + ++AK G GS +AS+
Sbjct: 187 KAQSVGTAAGAAPSSPNAAQVTIDVDFVAEAIEAKRAVGGRGSNLASA 234
>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
Length = 767
Score = 26.2 bits (55), Expect(2) = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 100 NGIRRCMCLKGFGSPNV 150
N + C CL+GFG NV
Sbjct: 324 NAMASCSCLRGFGEQNV 340
Score = 21.0 bits (42), Expect(2) = 3.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 229 DKNVGTGLVGAPACGDVMKLQIKVDENGKIV 321
++NVG L G G ++++ NG +V
Sbjct: 337 EQNVGEWLQGDHTSGCRRNVELQCSSNGSVV 367
>01_06_1493 + 37753816-37755558
Length = 580
Score = 25.8 bits (54), Expect(2) = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 100 NGIRRCMCLKGFGSPNV 150
N + C CL+GFG NV
Sbjct: 84 NAMAPCSCLRGFGEQNV 100
Score = 21.0 bits (42), Expect(2) = 4.9
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 229 DKNVGTGLVGAPACGDVMKLQIKVDENGKIV 321
++NVG L G G ++++ NG +V
Sbjct: 97 EQNVGEWLQGDHTSGCRRNVELQCSSNGSVV 127
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 427 NTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQTEN 546
+ D+A LPP + C ++ ED A L R+ + EN
Sbjct: 282 SVDLAMLAGLPPAAVLCEIVDEDGSMARLPKLRVFAEREN 321
>09_04_0650 -
19214589-19215106,19215839-19215935,19216100-19216189,
19216323-19216436,19217126-19217201,19217329-19217618
Length = 394
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 47 RLSSEFVFLKY--IKWLF*STEFVDVCVLKALEVLM*FLRHLIMQTSLTITRI 199
RL SEF+ L+Y I +L + FVD+C A+ L+ +R L+ Q L + +
Sbjct: 118 RLLSEFLNLRYSQISFLLARSFFVDLCT--AILALLARVRALVQQMLLDVVSV 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,205
Number of Sequences: 37544
Number of extensions: 305684
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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