Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f11f
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 1e-38
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 32 0.46
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1) 30 1.9
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 30 1.9
SB_26179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41) 28 7.5
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 156 bits (379), Expect = 1e-38
Identities = 71/82 (86%), Positives = 76/82 (92%)
Frame = +1
Query: 157 AAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFK 336
A+ YH NVI+HYENP+NVGSLDK D VGTGLVGAPACGDVMKLQIKVDE GKI+DAKFK
Sbjct: 28 ASNYHKNVIEHYENPKNVGSLDKDDATVGTGLVGAPACGDVMKLQIKVDEQGKIIDAKFK 87
Query: 337 TFGCGSAIASSSLATEWVKGKT 402
TFGCGSAIASSSLATEWVKGK+
Sbjct: 88 TFGCGSAIASSSLATEWVKGKS 109
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = -2
Query: 470 SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARE-LEAIAEPHPKVLNLAS-TIFPFSST 297
SL+ SS +S F S+S +VFP + S+ + L + + P + + +S ++FP SS+
Sbjct: 1168 SLSDFLTSSSLLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSS 1227
Query: 296 LICNFITS 273
L +F+TS
Sbjct: 1228 LPSDFLTS 1235
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = -2
Query: 518 SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 339
S + ++ +S+S+ LT SSL S F S+S +VFP + S+ + +
Sbjct: 856 SSSLSVFPTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 911
Query: 338 VLNLAST--IFPFSSTLICNFITS 273
L +S+ +FP SS+L +F+TS
Sbjct: 912 FLTSSSSLSVFPTSSSLPSDFVTS 935
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = -2
Query: 518 SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 339
S + ++ +S+S+ LT SSL S F S+S +VFP + S+ + +
Sbjct: 591 SSSLSVFLTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 646
Query: 338 VLNLAST--IFPFSSTLICNFITS 273
L +S+ +FP SS+L +F+TS
Sbjct: 647 FLTSSSSLSVFPTSSSLPSDFLTS 670
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = -2
Query: 518 SDNAALIASSASIEQ*SLTGGKDSSLAISVFFNFSASSTVFPLTHSVARELEAIAEPHPK 339
S + ++ +S+S+ LT SSL S F S+S +VFP + S+ + +
Sbjct: 1186 SSSLSVFPTSSSLPSDFLTS---SSLP-SDFLTSSSSLSVFPTSSSLPSDFLTSSSSLSD 1241
Query: 338 VLNLAST--IFPFSSTLICNFITS 273
L +S+ +FP SS+L +F+TS
Sbjct: 1242 FLTSSSSLSVFPTSSSLPSDFLTS 1265
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = -2
Query: 449 SSLAISVFFNFSASSTVFPLTHSVARE-LEAIAEPHPKVLNLAS-TIFPFSSTLICNFIT 276
SS ++S F S+S +VF + S+ + L + + P + + +S ++FP SS+L +F+T
Sbjct: 580 SSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLT 639
Query: 275 S 273
S
Sbjct: 640 S 640
>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
Length = 505
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 61 ICFSEIYKMAFLINGIRRCMCLKGFGS 141
I F I +AF++ IRRC C++ GS
Sbjct: 351 ILFDSIVMLAFIVVCIRRCWCMRAEGS 377
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Frame = +1
Query: 133 FGSPNVILAAPYHANVIDHYENPRNV---GSLDKKDKNVGTGLVGAPAC---GDVMKLQI 294
FG P I A + NV++ E P+ + + +D +G G A GD + I
Sbjct: 411 FGHPVGITTATFMVNVLNKDEPPKQITLNPTSVAEDAGIGARAAGLTALDEEGDTIVFSI 470
Query: 295 KVDENGKIVDAKFKTFGCGSAIASSSLATE-WVKGKTVDEALKLKNTDIAKELSLPPV 465
+N + + C S+ A + VKGK EA L + + S PV
Sbjct: 471 APSDNSTLEKFEIGPTSCRLNGKQSTCAADLMVKGKLDYEARDLYSLTVMANSSTGPV 528
>SB_26179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 214 SLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIV 321
SLD D+ + T L A ACG++ ++ +DE IV
Sbjct: 91 SLDATDRELWTPLHAATACGNIDVVEYLMDEGANIV 126
>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 234 KCRYRPRWCTCMWRRNEVANQSGR 305
KC WC C WRR++ +S R
Sbjct: 57 KCSRTTPWCWCSWRRSDSYGRSAR 80
>SB_14662| Best HMM Match : 7tm_1 (HMM E-Value=8.99998e-41)
Length = 548
Score = 27.9 bits (59), Expect = 7.5
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 136 GSPNVIL-AAPYHANVIDHYENP-RNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDEN 309
G NVI+ AP V + P + GSL +K+ G+ +C + K+ IKV EN
Sbjct: 362 GKVNVIVYLAPSDKRVKLNNNGPLKQNGSLQVYNKS-HQGICSETSCAEKPKIVIKVSEN 420
Query: 310 G-KIVDAKFKTF 342
G + + K KTF
Sbjct: 421 GDEAGNNKGKTF 432
>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 280 MKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVD 408
+ L+ V EN V+A KT GC S A WV+ D
Sbjct: 524 LSLKFYVSENCPSVEAVVKTLGCTSLDAPDDAEALWVESVVGD 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,584
Number of Sequences: 59808
Number of extensions: 370434
Number of successful extensions: 1106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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