Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f11f
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p pro...   242   3e-64
AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA ...   242   3e-64
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    29   7.1  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    29   7.1  

>AY060228-1|AAL25267.1|  154|Drosophila melanogaster GH01635p
           protein.
          Length = 154

 Score =  242 bits (592), Expect = 3e-64
 Identities = 113/126 (89%), Positives = 120/126 (95%)
 Frame = +1

Query: 160 APYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT 339
           A YH NV++HYENPRNVGSLDKKD  VGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT
Sbjct: 24  ALYHENVVEHYENPRNVGSLDKKDVTVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT 83

Query: 340 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSD 519
           FGCGSAIASSSLATEWVKGK++DEA KLKNTDIAKEL LPPVKLHCSMLAEDAIKAAL+D
Sbjct: 84  FGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALAD 143

Query: 520 YRIKQQ 537
           Y++KQQ
Sbjct: 144 YKVKQQ 149


>AE014297-829|AAF54298.1|  154|Drosophila melanogaster CG9836-PA
           protein.
          Length = 154

 Score =  242 bits (592), Expect = 3e-64
 Identities = 113/126 (89%), Positives = 120/126 (95%)
 Frame = +1

Query: 160 APYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT 339
           A YH NV++HYENPRNVGSLDKKD  VGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT
Sbjct: 24  ALYHENVVEHYENPRNVGSLDKKDVTVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKT 83

Query: 340 FGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSD 519
           FGCGSAIASSSLATEWVKGK++DEA KLKNTDIAKEL LPPVKLHCSMLAEDAIKAAL+D
Sbjct: 84  FGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALAD 143

Query: 520 YRIKQQ 537
           Y++KQQ
Sbjct: 144 YKVKQQ 149


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 172  ANVI--DHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFG 345
            ANVI  D    P+ V + +K ++ +   LV    C   +  ++KVDEN K     +  FG
Sbjct: 1541 ANVIIEDVMMMPKQVVAKEKGEEMLND-LVNDVEC---LVEEMKVDENEKQEKVDYDAFG 1596

Query: 346  CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSL 456
              +     +L++     +T+ E +K +  DI  +L++
Sbjct: 1597 LVNGFKDKTLSSLNSVKQTLKEEVKKEKADIMDKLTI 1633


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
 Frame = +1

Query: 172  ANVI--DHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVDENGKIVDAKFKTFG 345
            ANVI  D    P+ V + +K ++ +   LV    C   +  ++KVDEN K     +  FG
Sbjct: 1541 ANVIIEDVMMMPKQVVAKEKGEEMLND-LVNDVEC---LVEEMKVDENEKQEKVDYDAFG 1596

Query: 346  CGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSL 456
              +     +L++     +T+ E +K +  DI  +L++
Sbjct: 1597 LVNGFKDKTLSSLNSVKQTLKEEVKKEKADIMDKLTI 1633


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,503,360
Number of Sequences: 53049
Number of extensions: 551995
Number of successful extensions: 1456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)