Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f11f
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical ...   223   8e-59
Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    28   6.5  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    28   6.5  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    28   6.5  

>AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical
           protein Y45F10D.4 protein.
          Length = 153

 Score =  223 bits (545), Expect = 8e-59
 Identities = 103/137 (75%), Positives = 116/137 (84%)
 Frame = +1

Query: 124 LKGFGSPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGLVGAPACGDVMKLQIKVD 303
           L  F  P     A YH  VIDHYENPRNVGSLDK D +VGTG+VGAPACGDVMKLQI+VD
Sbjct: 13  LHKFALPAATSVAQYHEKVIDHYENPRNVGSLDKNDPSVGTGIVGAPACGDVMKLQIRVD 72

Query: 304 ENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTDIAKELSLPPVKLHCSM 483
           +NGKI++AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN +IAKEL LPPVKLHCSM
Sbjct: 73  DNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKNDEIAKELCLPPVKLHCSM 132

Query: 484 LAEDAIKAALSDYRIKQ 534
           LA+DAI+AAL DY+ KQ
Sbjct: 133 LAQDAIQAALKDYQKKQ 149


>Z82266-15|CAD36491.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 374 RELEAIAEPHPKVLNLASTIFPFSSTLICNFITSPHAGAPTRPVPTFLSFLSNEPTL 204
           R++  + +P PK    +S + P SS + CN   +PH+   T   P ++S LS + +L
Sbjct: 78  RQVAGLGDPAPKD---SSLLPPSSSFVYCNNCLTPHSSQRTCS-PAYVSTLSRQKSL 130


>Z68213-9|CAD37352.1|  608|Caenorhabditis elegans Hypothetical
           protein C01F6.6b protein.
          Length = 608

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 374 RELEAIAEPHPKVLNLASTIFPFSSTLICNFITSPHAGAPTRPVPTFLSFLSNEPTL 204
           R++  + +P PK    +S + P SS + CN   +PH+   T   P ++S LS + +L
Sbjct: 78  RQVAGLGDPAPKD---SSLLPPSSSFVYCNNCLTPHSSQRTCS-PAYVSTLSRQKSL 130


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 391 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 513
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 391 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 513
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 449 SSLAISVFFNFSASSTVFPLTHSVARELEA-IAEPHPKVLNLASTIFPFSSTLICNFITS 273
           S++ I    + + S+T   L  +VA E    I     KVL   ++    SST++   I  
Sbjct: 439 SNVVIKTSKSVAESTTTSQLKQTVASEKTTFIVSAFEKVLKSTTSTPSPSSTIVTTTIKV 498

Query: 272 PHAGAPTRPVPTFLSFLSNE 213
           P     T P PT  S L  E
Sbjct: 499 PTVTFSTLPDPTTKSILEIE 518


>U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical
           protein C26B9.1a protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -2

Query: 362 AIAEPHPKVLNLASTIFPFSSTLICNFITSPHAGAPTRPVPTFLSFLSNEPTLRG 198
           AI++P      + +T++P    +IC+++T PH  A +  +P+ L+   + PTL G
Sbjct: 133 AISDPKNVNAKVLATVYP--DNVICDWLTPPHYDAYS--MPSILAI--DVPTLTG 181


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-5 protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 412 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 504
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 412 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 504
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 412 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 504
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,569
Number of Sequences: 27780
Number of extensions: 292865
Number of successful extensions: 762
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)