Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09r
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.2  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   3.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    27   3.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   6.7  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.9  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 635 VYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTV--YKVTEEG 495
           V+DN   S   +GT  D +  I   +    LYVL E  +V  Y++T+ G
Sbjct: 230 VFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG 278


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -3

Query: 641 IYVYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTVYKVTEE 498
           +Y+ + +DG VK+    D S++DI    G D      E+ +++  + +
Sbjct: 130 VYMLNKQDGKVKRSYLGDSSLLDIDTSKGGDLFATSGENVSIWDYSRD 177


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 665 AFFGAKSGIYVYDNEDGSVKKYGTVDDSVI 576
           AFF +K  I +  +EDG+VK + T+  S+I
Sbjct: 234 AFFHSKFPIIISGSEDGTVKIWHTLSYSLI 263


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 350 NPAQVRLIKPPFVIENGVVFIVDNDIYTIFANGTSEKTD 234
           +P+QV  +     + NG V+ +D  +Y +  N T+ + D
Sbjct: 452 HPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKD 490


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 243 LTCTVRKYSINVVIYNKNNTVFYDK 317
           ++ TV K+ I   +YN NN VF DK
Sbjct: 373 ISLTVLKHEIRTKLYNSNN-VFLDK 396


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 228 TGRKTNSLGRRSHSNPIL 175
           +GR+  +L RR HS PIL
Sbjct: 695 SGRRARTLQRRRHSTPIL 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,861
Number of Sequences: 5004
Number of extensions: 58453
Number of successful extensions: 220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)