Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09r
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0323 + 8947335-8947724                                           33   0.19 
02_05_1332 + 35758657-35758728,35758959-35760689                       30   1.7  
08_02_1603 - 28156141-28157025,28157547-28157999                       30   2.3  
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573...    29   5.3  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    28   7.1  
10_01_0325 - 3568783-3569040                                           28   7.1  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   7.1  

>02_02_0323 + 8947335-8947724
          Length = 129

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 393 CDRKWGAGNPWPSRKPSSGEANQTTVCHRK 304
           C R W   + WP   PSSGE     VC R+
Sbjct: 92  CRRIWRLASYWPDPAPSSGEGGHLPVCQRE 121


>02_05_1332 + 35758657-35758728,35758959-35760689
          Length = 600

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 680 DDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDI-VKLNGTDALYVLTEDHTVYKVT 504
           D      FG+K   +   +E+GS   +  ++D ++ +  + NG +A     ED  VY  +
Sbjct: 472 DSGNATDFGSKREEHSGGDEEGSQNDFRNIEDDIVGMNTEGNGEEAFQ--PEDDVVYGDS 529

Query: 503 EEGNKKVAVDGAKDAQQIMLDYSD 432
                 +A + A DA + + +  D
Sbjct: 530 LSPADDIAAEAADDASRELEEQQD 553


>08_02_1603 - 28156141-28157025,28157547-28157999
          Length = 445

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 749 LYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 573
           LYR  NG A+   D     +AS+ D+ LA+F   +G    D+ DGS+  +G     VI+
Sbjct: 48  LYRLPNG-ASDFPDAVARMSASLSDA-LAYFYPLAGRIRQDDHDGSLSIHGQHGAEVIE 104


>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
            17458429-17458519,17458623-17459757,17459998-17460077,
            17460449-17460533,17460614-17460705,17461079-17461147,
            17461227-17461263,17461351-17461433,17461695-17461840,
            17461868-17462138,17462245-17462281,17462428-17462721
          Length = 1648

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 689  ASIDDSKLAFFGAKSGIYVYDNEDGSVKKY 600
            ASI+ +K       SG ++YDN DGS+ ++
Sbjct: 1041 ASINKNKAKVTDYSSGSFLYDNRDGSLSQH 1070


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 740  YKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSV 579
            Y+ GT + + DD  S ++SI  + +A    +    V  N + +    GT+D +V
Sbjct: 2061 YEPGTGSSVADDNNSPSSSITGTLVALRSTQMITTVLPNANITPNNLGTLDSAV 2114


>10_01_0325 - 3568783-3569040
          Length = 85

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 365 LGLPENPAQVRLIKPPFVIENGVVFIVDNDIY 270
           L  PE+P    ++ P FV ++G + I+  DIY
Sbjct: 29  LNPPEDPKNRIILHPAFVYDDGDLDIIQEDIY 60


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 698 SSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGT 552
           SS    DDS  A     SG+ +  N     K  G + D+V++    NGT
Sbjct: 382 SSANKADDSSTASDTKSSGVTMSINASNPDKSVGGLQDAVVETKHSNGT 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,023
Number of Sequences: 37544
Number of extensions: 357401
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)