Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09r
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    35   0.073
AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 34.7 bits (76), Expect = 0.073
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
 Frame = -3

Query: 578 IDIVKLNGTDALYVLTEDHTVYKVTEEGNKKV--AVDGAKDAQQIMLDYSDNVYFYGPAK 405
           +D+ K N  D    L     V+ VT EG+      V   K   +I      N+ F    +
Sbjct: 530 VDVYKPNHMDNCDTLVNGLKVFNVTGEGDLSYLSTVKVIKGNIEIRHTTLQNLSFISKLE 589

Query: 404 KPKVVTENGVQE--ILGLPENPAQVRLIKPPFV-IEN---GVVFIVDNDIYTIFANGTSE 243
           + KV  E G+ E  ++ + +NP   RL  P F  IEN   G++ +   +++  F     E
Sbjct: 590 RIKVQNE-GIDEQLLINIHDNPNMTRLGLPNFQDIENYWSGIIRVNFENLHPDFCLTLPE 648

Query: 242 KTDFKLDAKPTASAVEATLIQYY 174
             +F L +  +   ++A L + Y
Sbjct: 649 LNNFFLQSDLSVENLDAKLCEDY 671


>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 644 GIYVYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDH 522
           G+Y ++ +DG ++K       + +I  L G D  YV T+DH
Sbjct: 243 GVYTWNQKDGEIQK-------ISEIETLTGCDNFYVDTQDH 276


>AC087082-1|AAG37982.2|  157|Caenorhabditis elegans Hypothetical
           protein Y92H12BM.1 protein.
          Length = 157

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 659 FGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTVYKV 507
           F +K+G Y Y N   SV K+       IDI+ L     L   TE   V K+
Sbjct: 12  FDSKTGRYYYYNASSSVTKWQKPTGIDIDIIPLAKLQTLKENTEGGAVSKI 62


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 733 TVRPRKCLMTVQARPHPSTTLNWRSSAPNPVFTFTTTKTAALRNT 599
           ++  R  ++T   RP+ STT    S APN   T TTT  A   NT
Sbjct: 11  SIPSRDPVITTTIRPN-STTTTTTSPAPNITTTTTTTTIAPPTNT 54


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 526 TTPFTKSPKKAIRKSLLTALKMPNRLCLITPTTFTFTARP 407
           TT  TK+P     +S  T  ++P       PTT T T  P
Sbjct: 338 TTTTTKAPTTTTTQSTTTTTQLPTTTTTTEPTTTTTTVDP 377


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 479 VDGAKDAQQIMLDYSDNVYFYGPAKKPKVVTENGVQEILGLP-ENPAQVRLIKPPFVIEN 303
           +DGA      + DY+  ++  G  K  +      +Q  +  P ++ AQ  L   PF+I  
Sbjct: 349 IDGACHVSGDVFDYTQKLFHTG-RKFDETKKAQYLQMCIEQPTQDRAQYALEVDPFIIVM 407

Query: 302 GVVFIVDNDIYTIFANGTSE 243
           G +F   +  + +FAN + E
Sbjct: 408 GELFAWASIEHDVFANASRE 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,031
Number of Sequences: 27780
Number of extensions: 326876
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)