Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09f
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    29   0.58 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.8  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.3  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   3.1  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   5.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   7.2  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   7.2  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 183 LIMSFWLLYTDNSSGKKSVVMMIWSSSLVVGAPLTKLAA 67
           L++ FWL+ T+      S+ +  W  ++ +  P+T L+A
Sbjct: 120 LVVDFWLIPTEGDPVSASLSLPPWKEAVRIITPITSLSA 158


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 419 VYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTV--YKVTEEG 559
           V+DN   S   +GT  D +  I   +    LYVL E  +V  Y++T+ G
Sbjct: 230 VFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG 278


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 413 IYVYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTVYKVTEE 556
           +Y+ + +DG VK+    D S++DI    G D      E+ +++  + +
Sbjct: 130 VYMLNKQDGKVKRSYLGDSSLLDIDTSKGGDLFATSGENVSIWDYSRD 177


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 389 AFFGAKSGIYVYDNEDGSVKKYGTVDDSVI 478
           AFF +K  I +  +EDG+VK + T+  S+I
Sbjct: 234 AFFHSKFPIIISGSEDGTVKIWHTLSYSLI 263


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 42  RYYSSSLSWRPVL*AALRPLTTRTKSS 122
           R+ S SL WRPV    + P T  T+ S
Sbjct: 81  RWLSRSLKWRPVTYETVYPQTYETQMS 107


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 133 FLPRRIVGIQQPKRHNQYNSTIELNQL 213
           F  R +  +    RHN++N  I+LN++
Sbjct: 158 FKERNLESMDYLMRHNEFNDAIDLNEV 184


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = -2

Query: 180 IMSFWLLYTDNSSGKKSVVMMIWSSSLVVGAPLTKLAARKATTSNSVYFIFVSSVLGYDI 1
           ++S W++  DN        ++I        AP+  L  R    +N  ++I  S    YD+
Sbjct: 476 VLSNWIVSVDNLESPVDPELVISELKKDSSAPIKSLLDRSEFFTNVSHWIIGSDAWAYDL 535


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 317 KNGTATKMLDDGTSSTASIDDS-KLAFFGAKSGIYVYDN 430
           +NGTA  +L  GT  T+ +     L ++G + G+YV DN
Sbjct: 471 ENGTARLIL--GTMITSLLFPGIPLLYYGDEQGMYVLDN 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,442
Number of Sequences: 5004
Number of extensions: 39863
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)