Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f09f
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1332 + 35758657-35758728,35758959-35760689 30 1.4
08_02_1603 - 28156141-28157025,28157547-28157999 30 1.8
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 29 4.2
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 28 5.6
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 5.6
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 28 7.4
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 27 9.8
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +2
Query: 374 DDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDI-VKLNGTDALYVLTEDHTVYKVT 550
D FG+K + +E+GS + ++D ++ + + NG +A ED VY +
Sbjct: 472 DSGNATDFGSKREEHSGGDEEGSQNDFRNIEDDIVGMNTEGNGEEAFQ--PEDDVVYGDS 529
Query: 551 EEGNKKVAVDGAKDAQQIMLDYSD 622
+A + A DA + + + D
Sbjct: 530 LSPADDIAAEAADDASRELEEQQD 553
>08_02_1603 - 28156141-28157025,28157547-28157999
Length = 445
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVID 481
LYR NG A+ D +AS+ D+ LA+F +G D+ DGS+ +G VI+
Sbjct: 48 LYRLPNG-ASDFPDAVARMSASLSDA-LAYFYPLAGRIRQDDHDGSLSIHGQHGAEVIE 104
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 365 ASIDDSKLAFFGAKSGIYVYDNEDGSVKKY 454
ASI+ +K SG ++YDN DGS+ ++
Sbjct: 1041 ASINKNKAKVTDYSSGSFLYDNRDGSLSQH 1070
>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 314 YKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSV 475
Y+ GT + + DD S ++SI + +A + V N + + GT+D +V
Sbjct: 2061 YEPGTGSSVADDNNSPSSSITGTLVALRSTQMITTVLPNANITPNNLGTLDSAV 2114
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 356 SSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGT 502
SS DDS A SG+ + N K G + D+V++ NGT
Sbjct: 382 SSANKADDSSTASDTKSSGVTMSINASNPDKSVGGLQDAVVETKHSNGT 430
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 4 IVSKHRRYKDEIYAITRRRFPGGQFCERRSDH 99
+V++HR++ DEI + + P G +C++R+ +
Sbjct: 292 LVTRHRKHADEILTLQFSQ-PDGTYCQQRNQN 322
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 467 DSVIDIVKLNGTDALYVLTEDHTVYKVTEEGNKKVAVD 580
DSV+ I L LY + ED Y++ +GN +D
Sbjct: 273 DSVVTIQGLTPAGYLYAIGEDGKSYELHPDGNSVTMID 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,267
Number of Sequences: 37544
Number of extensions: 262662
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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