Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09f
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)                    30   1.4  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)                28   7.6  

>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/93 (24%), Positives = 46/93 (49%)
 Frame = +2

Query: 299  KGLYRYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVI 478
            KG+Y ++     + +++GT    +  D++ A     +GI ++     + K  G+    V 
Sbjct: 2308 KGMYLHRVDHTRRPMENGTVVLNTKTDNEEASKNINAGITIFHELTKNAKVIGS-PPVVD 2366

Query: 479  DIVKLNGTDALYVLTEDHTVYKVTEEGNKKVAV 577
            +I +   TDA  + T+  T+Y +  +GN  VA+
Sbjct: 2367 NITRDAATDAKSISTDVKTIYDL--KGNATVAM 2397


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 326  TATKMLDDGTS-STASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGT 502
            TA  M+ DGT+ S+ S D +               + DG+     + D +    +  NGT
Sbjct: 2655 TAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMITNGT 2714

Query: 503  DALYVLTEDHTVYKVTEEGNKKVAV 577
             A+ ++T+  T   ++ +G   V V
Sbjct: 2715 TAVPMITDGTTAAPISTDGTTAVPV 2739


>SB_12030| Best HMM Match : DUF413 (HMM E-Value=1.5)
          Length = 377

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = +2

Query: 311 RYKNGTATKMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVK 490
           R  + T++   D+  S TAS++++K    GA + +    N+DG     G  DD+ +++ +
Sbjct: 62  RNLDSTSSPGPDELKSLTASLEETKDYSVGAAASVDYNGNDDGVDYDDGYYDDNSLNVGQ 121

Query: 491 LNGTDALYVLTEDHTVYKVTEEGNKKVAV-DGAKD 592
            N  D+  + T    + K  EE  K  A+ D  KD
Sbjct: 122 -NQNDSEDLATCRSELEKAKEEIEKAWALYDKEKD 155


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 326  TATKMLDDGTS-STASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGT 502
            TA  M+ DGT+ S+ S D +               + DG+     + D +    +  NGT
Sbjct: 1744 TAASMITDGTTVSSISTDGTTAVPISTNGATAAPMSTDGTTAAPMSTDGTTAVPMITNGT 1803

Query: 503  DALYVLTEDHTVYKVTEEGNKKV 571
             A+ ++T+  T   ++ +G   V
Sbjct: 1804 TAVPMITDGTTAAPISTDGTTAV 1826


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 275 DNGEVKEYKGLYRYKNGTATKMLDDGTSSTASIDD-SKLAFFGAKSGIYVYDNEDGSVKK 451
           D+ EVKE+   Y  K+G A+K L D       + D  +   F A   +   DNED  +K 
Sbjct: 465 DDLEVKEFISSYFTKSGEASKRLKDRVEKDRRLADFVRNPLFLAMICVVFEDNED-RIKD 523

Query: 452 YGTVDDSVIDIV 487
             T +D   +IV
Sbjct: 524 DLTREDLYNEIV 535


>SB_25949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 341 LDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKL-NGTD 505
           +DDGT S   IDD   +      G   +D+ D     +  +DD   D   + +GTD
Sbjct: 307 IDDGTDSHDDIDDGTDSHDDIDDGTDDHDDTDDGTDGHDDIDDDTYDHDDIDDGTD 362



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +2

Query: 341 LDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKL-NGTDALYV 517
           +DDGT S   IDD          G   +DN D     +  +DD       + +GTD  + 
Sbjct: 135 IDDGTDSHDDIDDGTDDHDDIDDGTDSHDNIDDGTDDHDDIDDGKDSHDDIDDGTDD-HD 193

Query: 518 LTEDHTVYKVTEEGNKKVAVDGAKDAQQI 604
            TEDH       E +  +  DG  D   I
Sbjct: 194 DTEDHDDIDDGTESHDDID-DGTDDHDDI 221


>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
          Length = 318

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 335 KMLDDGTSSTASIDDSKLAFFGAKSGIYVYDNEDGSVK 448
           ++ DDGTS+T++  +S+    G ++ +  YD   G ++
Sbjct: 124 RVKDDGTSTTSTSCNSQCISIGGRTTLKQYDGSGGRIQ 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,831
Number of Sequences: 59808
Number of extensions: 322004
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)