Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f09f
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.9  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 491 LNGTDALY-VLTEDHTVYKVTEEGNKKVAVDGAKDAQQIMLDYSDNV 628
           LN   +L+  LTE + VYKV   G+  + V GA   +    D++D V
Sbjct: 449 LNAMYSLFDTLTERNRVYKVETIGDAYMVVSGAPVKEN---DHADRV 492


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +2

Query: 377 DSKLAFFGAKSGIYVYDNEDGSVKKYGTVDDSVIDIVKLNGTDALYVLTEDHTVY 541
           D  +     K  +Y+Y + D S   Y     +V + VK    D  YV+ +    Y
Sbjct: 494 DQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDSEHGY 548


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 347 HQAFSWPYRFCIDKG 303
           HQ FS+P R  + KG
Sbjct: 616 HQIFSFPARLSLPKG 630


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 323 GTATKMLDDGTSSTASIDDSKLAFF 397
           GTA +++DD      ++DD  +  F
Sbjct: 38  GTAQQIIDDINEGKINMDDENVLLF 62


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 82  ERRSDH*RRGPNHHNDRF 135
           E+R +H   GP++++D F
Sbjct: 195 EKRKEHHLEGPSYNSDIF 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,208
Number of Sequences: 438
Number of extensions: 2976
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)