Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f07f
         (611 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.2  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   8.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.2  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 412 FDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYILQLHLKALAVVNVLYLLIIQVV 576
           F+D+  +  VFI    +I +   L  ++S   I  L+LK    ++ L    I +V
Sbjct: 232 FNDIFGWPLVFITGRFVIKILVALNFFTSTLEIDNLYLKHKLEISSLVQTAITLV 286


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 374 FIIVNVLRIPVCHSMICTYIVSFLYFI 454
           FII+ V+   VC+ MI      F ++I
Sbjct: 502 FIIIPVILTSVCYFMIGLNSQGFRFYI 528


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 175 TCPSCHASVMTKITTKASTK 234
           T  +   ++ TK TTK STK
Sbjct: 165 TSTTTRTTLTTKFTTKPSTK 184


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = +3

Query: 195 VGHDQNHDQSQHEDSHHR 248
           +GH       QH   HH+
Sbjct: 167 MGHHMQEQHPQHHQPHHQ 184


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = +3

Query: 195 VGHDQNHDQSQHEDSHHR 248
           +GH       QH   HH+
Sbjct: 169 MGHHMQEQHPQHHQPHHQ 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,997
Number of Sequences: 336
Number of extensions: 3099
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)