Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f07f
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0244 - 15984862-15984978,15985054-15985119,15985701-159857...    30   1.3  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    30   1.3  
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    29   2.9  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   2.9  
06_03_0743 + 24069752-24070483,24071890-24072345                       29   2.9  
06_03_0467 - 21066354-21066501,21066831-21066893,21067223-210672...    28   5.1  
02_05_1341 - 35801987-35802472                                         27   8.9  
02_04_0633 - 24616563-24617279                                         27   8.9  

>09_04_0244 -
           15984862-15984978,15985054-15985119,15985701-15985793,
           15987284-15987410,15988710-15988840,15989485-15989766,
           15989852-15989985,15990083-15990292,15990456-15990486
          Length = 396

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 341 ATPTLEPIQDDFIIVNVLRIPVCHSMICTYIVS 439
           A  T+EP Q D  +V +  +PVC+SM+C  +++
Sbjct: 150 AVVTIEP-QFDLPLVKLHDVPVCYSMLCRPVIA 181


>06_03_1508 -
           30653967-30654245,30654342-30654631,30654773-30654841,
           30654854-30654921,30655016-30655492,30655578-30655874,
           30655974-30656824,30656917-30656990,30657270-30657292,
           30657709-30657772,30658098-30658370,30658511-30658587,
           30658686-30658912
          Length = 1022

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 130 KTLHYTIREAKDEYIFFIYFSNNATTHACCVQTTD 26
           K  HY I++  DE+     FS + T  + C+Q TD
Sbjct: 67  KEFHYCIKDTDDEWNIAFNFSTDPTFLSNCMQATD 101


>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 515 CKIYSTELYNIKPNLRLIM*I*NIKTKLYKCKSSNGIQEY 396
           C  YS EL+N  PN+R I  + N  T     +S +  Q+Y
Sbjct: 92  CNPYSAELFNAGPNIRTIPFLCN-STSSSSAQSKDSTQDY 130


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 141 DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHR 248
           DG  +S  S    S+     HD +H+ + HE+  H+
Sbjct: 740 DGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPAHK 775


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 177 LSIVPRVGHDQNHDQSQHEDSHH 245
           LS+ P   HD +H   +H+  HH
Sbjct: 65  LSLTPSTTHDDDHHHRRHDQDHH 87


>06_03_0467 -
           21066354-21066501,21066831-21066893,21067223-21067291,
           21067666-21067742,21069451-21069558,21070008-21070274,
           21071964-21072607,21073370-21073550,21073688-21073834
          Length = 567

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 144 GHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 251
           G++ S SS    + V R GH Q   Q + E   H+T
Sbjct: 152 GNASSSSSASAAAAVARHGHQQQQQQQRSETRWHKT 187


>02_05_1341 - 35801987-35802472
          Length = 161

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 298 CMDSCMNSDHYCPNCNAYIGTYT 366
           C+D+ + +   CP+C A +GT T
Sbjct: 103 CIDTWLGTHATCPSCRATVGTST 125


>02_04_0633 - 24616563-24617279
          Length = 238

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -3

Query: 438 ETI*VQIIEWHTGIRNTFTIMKSSCIGSNVGVAVWTVMVRIHARVHAVWQTY-ARQTHAQ 262
           ET    ++ W  G+R   + + +    +  G   + V V+I   +H+ + +Y  R  H  
Sbjct: 134 ETKEQHVVAWGAGVRLPGSALDALAADARRGAEAFDVAVKIPTVIHSGYHSYDPRHVHLG 193

Query: 261 TQDQCDDVSLRAG 223
           T   C  +S R G
Sbjct: 194 TLVSC--MSRRVG 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,148
Number of Sequences: 37544
Number of extensions: 300123
Number of successful extensions: 892
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)