Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f07f
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)               29   2.2  
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   3.0  
SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)           29   3.0  
SB_45| Best HMM Match : Pkinase (HMM E-Value=0)                        29   3.9  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.2  
SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               27   9.1  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    27   9.1  

>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 347 PTLEPIQDD-FIIVNVLRIPVCHSMICTYIVSFLYF 451
           PT+EP QD+ FI V    +P  +  ICT+I    YF
Sbjct: 107 PTIEPYQDNVFINVICRNLPQWNDRICTHIKLIKYF 142


>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 201 HDQNHDQSQHEDSHHRTD 254
           HD +HD   H+D HH  D
Sbjct: 108 HDDDHDDDDHDDDHHHHD 125


>SB_25073| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 744

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 126 VLIDQDGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDPVFVH 269
           V ++Q+GH ++ SS       P   + + HDQ+    S + + PV V+
Sbjct: 263 VPVNQEGHDQTSSSVSGDDSAPVPVNQEGHDQTSSPVSGYDSAPVLVN 310


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 295 YCMDSCMNSDHYCPNCNAYIGTYTR*FH 378
           YC  +C ++ +YCP C  +I T+ +  H
Sbjct: 425 YCCQTCASNLYYCPLCKTFI-TFVQRIH 451


>SB_26106| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.53)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 147 HSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRT 251
           HS +R STG         H   HD  QH+ + H T
Sbjct: 175 HSTTRHSTGTTGHDTTQNHTVQHDTVQHDTAQHDT 209


>SB_45| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 851

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 504 LH-RAIQH*AELKIDHVNMKYKNETI*VQIIEWHTGIRNTFTIMKSSCIGSNVGVAVW 334
           LH ++I H  +LK +++   +++ET  ++I ++      T     S+ IG+NVG  VW
Sbjct: 582 LHGKSILH-RDLKPNNLLYHFQDETPRLKIADFGLSKDTTSASQSSTVIGTNVGCKVW 638


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 304  DSCMNSDHYCPNCNAYIGTYTR*FHNCERI--AYSCMP 411
            D+C    HYCPN +A I      +HN  RI     CMP
Sbjct: 2441 DACPPG-HYCPNGSAPISCPAGFYHNAGRIWNRTQCMP 2477


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 141  DGHSRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTD 254
            + H R R S  +     +  H  +H   QH DSHH  +
Sbjct: 944  ESHKRHRHSHHHHYQHYQYNHHHDHQSHQHHDSHHHRE 981


>SB_21450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 204 DQNHDQSQHEDSHHRT 251
           D  HD S+H+DS H T
Sbjct: 77  DSEHDDSEHDDSEHET 92


>SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 433 YISANHRMAYRNTQYVHNYEIILYRFQ-CRRCSLDSNGPNSCTSP 302
           YI  N+ M   N  +  N  +I Y    C++C LDS+  N  +SP
Sbjct: 247 YIRNNYAMG--NQHFGLNKAVIAYVVDSCQKCGLDSHTSNENSSP 289


>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 171 GNLSIVPRVGHDQNHDQSQHEDSHHR 248
           G+ S+ PRV H Q+   +QH++S +R
Sbjct: 577 GSDSLDPRVNHHQHTSHNQHQNSPNR 602


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -2

Query: 454  YEI*KRNYISANHRMAYRNTQY---VHNYEIILYRF 356
            Y    RNY  ANH   Y N  Y   +HNY   ++ +
Sbjct: 3128 YPYANRNYPYANHNYPYANHNYPYAIHNYLYAIHNY 3163


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 445 IFHIHMINLKFGLMLYSSVEYILQLHLKALAV 540
           +F+   INLK+G   Y+   Y L  + KA+AV
Sbjct: 556 VFYTKAINLKYGHFRYARAYYELGYYEKAVAV 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,844
Number of Sequences: 59808
Number of extensions: 368478
Number of successful extensions: 1316
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)