Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f07f
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    47   9e-06
U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    43   2e-04
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    38   0.007
AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical ...    31   0.49 
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    31   0.65 
AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical ...    29   2.0  
U23523-8|AAC46563.1|   87|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical...    29   3.5  
Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    28   6.0  
Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 20/76 (26%), Positives = 33/76 (43%)
 Frame = +1

Query: 142 MVTVGPDPAQVTCPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNS 321
           ++ + P   ++ CP C   ++T+  +     T I                P+C+ SC + 
Sbjct: 65  IIRLEPHATKLQCPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDI 124

Query: 322 DHYCPNCNAYIGTYTR 369
            H CPNC A IG + R
Sbjct: 125 IHTCPNCRAMIGVHRR 140


>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +1

Query: 169 QVTCPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPNCNA 348
           + TC SC   V T       + T I+               P+C+DSC ++ HYCP CNA
Sbjct: 90  ETTCYSCGKYVHTLPKFVIGSLTWIV-FILVLICFFPLAFVPFCLDSCKDAHHYCPRCNA 148

Query: 349 YIGTYTR*F 375
            +G   R F
Sbjct: 149 LLGIKKRIF 157


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +1

Query: 292 PYCMDSCMNSDHYCPNCNAYIGTYTR 369
           P+C+++  +++HYCP+C A+IGTY R
Sbjct: 80  PFCVETFKDAEHYCPSCRAWIGTYRR 105


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = +1

Query: 178 CPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPNCNAYIG 357
           CP C  ++MT +TT       +I                 C D   + DH CPNC   + 
Sbjct: 36  CPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPILIC-LCFDVSKDVDHNCPNCGLLLA 94

Query: 358 TYTR 369
           T  R
Sbjct: 95  TSNR 98


>AF068714-8|AAC17809.2|   86|Caenorhabditis elegans Hypothetical
           protein B0348.2 protein.
          Length = 86

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +1

Query: 160 DPAQVTCPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPN 339
           +P QV C  C  + +T+  T+      ++                 C DS  ++ HYCP+
Sbjct: 17  EPHQVFCQKCQCNQVTRTETQLGACWWVVFIIGCLLFWPICYWL--CCDSSKDTMHYCPS 74

Query: 340 CNAYI 354
           C   +
Sbjct: 75  CGTLL 79


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
 Frame = +1

Query: 163 PAQVTCPSCHASVMTKITTKASTKTHII------AXXXXXXXXXXXXXXPYCMDSCMNSD 324
           P ++ CP C   +++ I   A     II                     P+ +D  ++ +
Sbjct: 43  PIEMDCPHCQNHIVSHIERVAGVLPWIIFAILAFLGIFLFIIPWCFCCVPFFLDQLLDVN 102

Query: 325 HYCPNCNAYIGTYTR 369
           H CP C  ++G + R
Sbjct: 103 HSCPACKKFLGRFNR 117


>AL032626-6|CAA21526.1|  132|Caenorhabditis elegans Hypothetical
           protein Y37D8A.6 protein.
          Length = 132

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +1

Query: 160 DPAQVTCPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPN 339
           +P    CP C+ +V T++       +  +                +C+D   +S H CPN
Sbjct: 65  EPYTEFCPRCNTNVCTRVERTMGFCSWTMLFLGLFVFFPLLCC--FCLDGFKDSRHSCPN 122

Query: 340 CNAYIGTYTR 369
           C   + +Y R
Sbjct: 123 CGTIL-SYKR 131


>U23523-8|AAC46563.1|   87|Caenorhabditis elegans Hypothetical
           protein F53A9.8 protein.
          Length = 87

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 201 HDQNHDQSQHEDSH-HRTDPVFVHVFALRMSAILHGLVHEFGPLLSKLQ 344
           H  +HD+  HED H H  D   VH  A       HG  H+ G   +K Q
Sbjct: 13  HHDHHDEHHHEDHHEHGADGEHVH-HAGDHCDTQHGGNHQAGEHCAKTQ 60


>AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.15 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/64 (26%), Positives = 21/64 (32%)
 Frame = +1

Query: 178 CPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPNCNAYIG 357
           CP C  SV T+      T   II                 C  S  +  H+CPNC   + 
Sbjct: 88  CPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPILYCLCCAGS-KDVKHFCPNCGTMLA 146

Query: 358 TYTR 369
              R
Sbjct: 147 CKKR 150


>Z82285-8|CAB05297.2|  393|Caenorhabditis elegans Hypothetical
           protein T28F3.3 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 201 HDQNHDQSQHEDSHHRTDPVFVHVFAL 281
           HD NH   +H+ SH  ++ + V  F +
Sbjct: 149 HDHNHSHKEHDHSHDHSNQLRVGTFVI 175


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 346  RCSLDSNGP---NSCTSPCSMADIRKANTCTNTGS 251
            RCS+DS  P   ++C   CS+A++  + TC ++ +
Sbjct: 1737 RCSVDSICPAESDTCLPVCSVANVCSSGTCVSSNT 1771


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 346  RCSLDSNGP---NSCTSPCSMADIRKANTCTNTGS 251
            RCS+DS  P   ++C   CS+A++  + TC ++ +
Sbjct: 1737 RCSVDSICPAESDTCLPVCSVANVCSSGTCVSSNT 1771


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 163 PAQVTCPSCHASVMTK 210
           P+ VTCP C+A V+TK
Sbjct: 8   PSLVTCPQCNAVVLTK 23


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +1

Query: 331 CPNCNAYIGTYTR*FHNCERIAYSCMPFDDLHLYSFVFIFHIHMINLKFGLMLYSSVEYI 510
           CP C  ++ ++    H     A   +PF     +  +F    HM N K  L+ +     +
Sbjct: 15  CPKCEYFLCSWQDYAHTMHIFAGIAIPFYSFGFHCILFKTPKHMNNSKVSLLNFHFWSCL 74

Query: 511 LQLHLKALAVVNVLYL 558
           L +   AL V   L+L
Sbjct: 75  LDIIFSAL-VTPYLFL 89


>Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical
           protein F35E8.2 protein.
          Length = 133

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 426 VQIIEWHTGIRNTFTIMKSSCIGSNVGVAVWT 331
           VQ++ W + +R    ++  SC   N    +WT
Sbjct: 3   VQVVSWFSWLREPIQLLDLSCTSFNGTAFIWT 34


>Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical
           protein C08E8.1 protein.
          Length = 102

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/64 (21%), Positives = 22/64 (34%)
 Frame = +1

Query: 178 CPSCHASVMTKITTKASTKTHIIAXXXXXXXXXXXXXXPYCMDSCMNSDHYCPNCNAYIG 357
           CP+C  + MT + T       +I                 C D   + +H CP+C   + 
Sbjct: 36  CPTCEKAYMTSVNTHIGVCWWLICFFGTVLCCFPFLFF-LCCDVSKDVNHNCPSCGMLLA 94

Query: 358 TYTR 369
              R
Sbjct: 95  KKNR 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,068
Number of Sequences: 27780
Number of extensions: 274589
Number of successful extensions: 764
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)