Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f06r
(504 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0) 184 4e-47
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 30 0.94
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 29 1.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24) 28 5.0
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25) 27 6.6
SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
Length = 166
Score = 184 bits (448), Expect = 4e-47
Identities = 95/156 (60%), Positives = 113/156 (72%), Gaps = 4/156 (2%)
Frame = -2
Query: 458 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 279
ML+PK+NRV IYEYLFKEGV VAKKD+++PKHT++E +PNL VIKA+QSLKSRGYV+E+F
Sbjct: 1 MLIPKKNRVIIYEYLFKEGVCVAKKDFNSPKHTQIENVPNLHVIKALQSLKSRGYVEEKF 60
Query: 278 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV-RTETVRRGPVGR--PDAPARSAE 108
W+H+YW LTNEGI YLR FLHLP EIVPATL+R V R ET R P G P P +
Sbjct: 61 CWKHYYWNLTNEGITYLRDFLHLPTEIVPATLRRQVTRAETARPRPKGMDGPRGPGEGGD 120
Query: 107 -DRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG 3
DR +YRR P PGV + K G G EF+ G
Sbjct: 121 RDRESYRRGP-PPGV---EGKGGAGSGFKP-EFRQG 151
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 30.3 bits (65), Expect = 0.94
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 89 RTPAAPGVAPHDK-KADVGPGS 27
+TPA PG+AP D K VGPG+
Sbjct: 365 KTPALPGIAPSDALKGTVGPGN 386
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 80 AAPGVAPHDKKADVGP 33
A PG+APHDKK+ GP
Sbjct: 545 ARPGLAPHDKKSGKGP 560
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 152 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 33
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = -2
Query: 215 HLPPEIVPATLKRSVRTETVRRGPVGRPDAP----ARSAEDRSAYRRTPAAPG 69
HL P ++ + S+ RGP GRP P R + R P +PG
Sbjct: 110 HLSPAVIRLCMGGSLTCPPGPRGPPGRPGHPGQKGTRGRRGQRGRRGNPGSPG 162
>SB_3936| Best HMM Match : Collagen (HMM E-Value=7.5e-24)
Length = 270
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 152 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 33
+GP+G P P + R P PG P K+ + GP
Sbjct: 199 QGPIGPPGRPGPKGPKDTCPRCPPGPPG--PKGKRGETGP 236
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 434 VAIYEYLFKEGVMVAKKDYHAPKHTELEKIPN 339
+A +++L K + + APK +EK+PN
Sbjct: 1395 IADFDFLSKSAIQALRLPVPAPKVNNMEKVPN 1426
>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
Length = 578
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = -2
Query: 386 KDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLP 207
+DY A T I + ++ + + SRG+VK+ +A+ W + + +L +L L
Sbjct: 118 EDYDASGGTVY--ITAIYTLEMICKIISRGFVKDSYAYLRDTWNWLDSLVVFLS-YLSLA 174
Query: 206 PEIVPATLKRSVR 168
P+I + R++R
Sbjct: 175 PDIASLSGIRTLR 187
>SB_48479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 430 ATRFCLGINILKAACRLT*HRKEQG 504
+ RFCLGIN+L C++ QG
Sbjct: 279 SNRFCLGINLLLRTCKVEQENGMQG 303
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 140 GRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 27
G P+ + S+E R RT AP P K PG+
Sbjct: 6325 GEPEGTSPSSESRIPVGRTTKAPTTKPASKTTTTRPGT 6362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,072,640
Number of Sequences: 59808
Number of extensions: 291684
Number of successful extensions: 1055
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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