Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f06f
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 142 1e-34
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.95
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 2.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 2.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 2.2
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.9
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.9
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.7
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.7
AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 6.7
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 8.9
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 8.9
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 8.9
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 27 8.9
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 8.9
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 8.9
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 142 bits (345), Expect = 1e-34
Identities = 77/158 (48%), Positives = 96/158 (60%)
Frame = +2
Query: 47 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 226
M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF
Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60
Query: 227 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 406
AWRH+YWYLT+ GI YLR +L LP EIVPAT+K R V P A DR
Sbjct: 61 AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119
Query: 407 AYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 520
AYR +K + GPG A + ++ G+GRG P
Sbjct: 120 AYRT----------EKVTEAGPGGAPV-YRAGFGRGAP 146
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 445
G V RP APAR A + R PAAP P
Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 514
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 514
GP G P AP E S R+ ++PG P GP D GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 523
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 523
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 523
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 523
GP G P +PA + A PA P A GPG +GG G PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 368 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 490
+ D+ + S++D + ++TPA P KKA+ S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 368 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 496
+ D+ + S++D + ++TPA P KKA+ S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 491 IQDQLSLDQHQPFYHEVQHQGQQE 420
+Q+Q + Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 350 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG-YGRGRPAS 526
R GP GRP P R + + PA G A H + D PG K G GRG P +
Sbjct: 165 RPGPDGRPGQPGRKGNNGRPGQ--PAPQGNAGHPGR-DGEPGQPGNPGKDGRKGRGHPGT 221
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 484
G +P A ++ A+D SAY+RT H +K + PG +D
Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 520
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.1
Identities = 19/56 (33%), Positives = 22/56 (39%)
Frame = +2
Query: 353 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 520
+GP G P APA+ PA +P A PGS G GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 356 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 478
GP G+P AP + D P P P AD PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 353 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 523
+GP G+P P + A R PA AP A PG A + +G P+
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 311 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 454
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 27.5 bits (58), Expect = 6.7
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +2
Query: 311 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 454
P T+ S RT + R PA+S ED S PAAP A K
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435
>AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical
protein Y53G8AM.8 protein.
Length = 789
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 344 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 430
T+ PVGR ++ ARS ++ SA R+ P +
Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 293 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 463
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 464 VGPGSADLEFK 496
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 293 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 463
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 464 VGPGSADLEFK 496
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 131 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 262
AP ++ +PNL + ++S GY+ + FYWY+ +E
Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +2
Query: 299 PEIVPATLKRSVRTETVRRGPVGR--PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 472
PE PA + P G PDA A + E +A PAA G + A P
Sbjct: 365 PEAAPAEAAPAAEGAGGGAEPAGAAAPDAAAAAPEAAAAPEAAPAAEGAGGGAEPAGAAP 424
Query: 473 GSADLEFKGGYGRGRP 520
+A +G G P
Sbjct: 425 EAAAAAPEGAGGGEAP 440
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 293 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 463
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 464 VGPGSADLEFK 496
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 293 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 463
L P+I P AT RS +R V+ P APA + ++++A R A G A + +
Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380
Query: 464 VGPGSADLEFK 496
V PG+ K
Sbjct: 381 VNPGTPSTTIK 391
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,975
Number of Sequences: 27780
Number of extensions: 249478
Number of successful extensions: 931
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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