Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05r
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.5  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   8.0  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 282 EVDQRE*FRTGNFATPPVICTRHSGLR 202
           ++D+ E   TGN A PP+     SGLR
Sbjct: 140 KLDEIEVKVTGNDAPPPITSFETSGLR 166


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 344 PESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 240
           P + GFR    E  +   K+K+L+SE    P + +
Sbjct: 195 PFAKGFR----ENGKSSAKRKQLVSEHPDSPNSKK 225


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 HVILFLIPDWWSKFYIHIALYN 467
           + +L L+ D+W+++   I  YN
Sbjct: 334 NALLALLDDYWNEYIPPILYYN 355


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 HVILFLIPDWWSKFYIHIALYN 467
           + +L L+ D+W+++   I  YN
Sbjct: 334 NALLALLDDYWNEYIPPILYYN 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,436
Number of Sequences: 336
Number of extensions: 3816
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)