Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05r
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...   104   2e-23
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    30   0.31 
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   2.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.2  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   2.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   6.7  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score =  104 bits (249), Expect = 2e-23
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
 Frame = -2

Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
           WMM  L LE G L+++ +  +   ++ K QP S +FLDIT+ +AVLEN LRNFS LT  D
Sbjct: 109 WMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSD 168

Query: 542 VIAIKYNSKVYELCVLETKPGNA---VIIIECDMNVEFAPPVGYKEQ-DHVSRSNDGAVE 375
           +  I YN +VY++ V++ +P ++   V ++E D+ V+F PP+GY+E      + N   V+
Sbjct: 169 IFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEESLQKNKQQNIAGVQ 228

Query: 374 G--MDEDPAAMMPESSGFRAFSGEGNRLDGKK 285
           G  + +     +          G G +L+GK+
Sbjct: 229 GTMVTKIGYDELVRQGDSNLMKGTGTKLNGKE 260


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 547 PVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRF 711
           P + ++ L  +FS+  F F+ +K + +  +N+      SD   + IK P++ T F
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFNISAYVDTSDLPILFIKHPNNGTSF 231


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 320 FSGEGNRLDGKKKKLISESDSEPGTSQPRQSYV 222
           FS E  + DGK +  +SES S  GTS    S V
Sbjct: 3   FSAEQAKKDGKDQSPVSESSSVGGTSPATASSV 35


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 275 ISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRN 168
           IS S S+P +S P  S +   PD DF      F+++
Sbjct: 137 ISSSSSDPSSSPPPSSSLLKTPDNDFCARPETFVKS 172


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = -2

Query: 419 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 240
           ++ D  S S+D   E   ED  +    S      S EG+          SES SE   S 
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183

Query: 239 PRQS 228
              S
Sbjct: 184 SSSS 187



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = -2

Query: 419 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 240
           ++ D  S S+D   E   ED  +    S      S EG+          SES SE   S 
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237

Query: 239 PRQS 228
              S
Sbjct: 238 SSSS 241


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 284 KKLISESDSEPGTSQPRQ 231
           K+L+ E+DSEPGT  PRQ
Sbjct: 7   KQLVPENDSEPGT--PRQ 22


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 653 ATFSKFQPLSEDFLDITNPKAVL 585
           A  SK  P SEDF+DIT P  +L
Sbjct: 491 ANSSKPIPDSEDFMDITRPFNIL 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,310
Number of Sequences: 5004
Number of extensions: 66171
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)