Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f05r
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623... 158 4e-39
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456... 153 1e-37
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 149 2e-36
01_01_0293 - 2399945-2400395,2400927-2401057,2401184-2401305,240... 93 2e-19
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 74 1e-13
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 29 5.3
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 29 5.3
06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435... 29 5.3
12_02_0820 + 23437811-23440230,23440336-23440534 28 7.0
03_05_1147 - 30744180-30744350,30744439-30744924 28 7.0
01_01_0051 + 389051-389623 28 7.0
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 28 9.2
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 9.2
>04_04_0882 +
29061504-29061512,29061852-29061964,29062371-29062398,
29062690-29062734,29063379-29063456,29063573-29063597,
29063690-29063722,29063793-29063914,29064015-29064145,
29064242-29064468,29065175-29065431,29065859-29065945
Length = 384
Score = 158 bits (384), Expect = 4e-39
Identities = 75/168 (44%), Positives = 106/168 (63%)
Frame = -2
Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
WMM N++L+EG +++++ +LP T+ K QP + DFLDI+NPKA+LE LR SC+TTGD
Sbjct: 151 WMMQNMLLQEGDTVRVKNTTLPKGTYVKLQPHTTDFLDISNPKAILEKTLRKLSCITTGD 210
Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDE 363
I + YN+K Y + ++ETKP +AV IIE D V+FAPP+ YKE ++ + + A E E
Sbjct: 211 SIMVAYNNKQYYIDIVETKPASAVSIIETDCEVDFAPPLDYKEPENPQQPSVPASEATAE 270
Query: 362 DPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVR 219
D A + + F+ F+G G RLDGK KL + S P S R
Sbjct: 271 DENAKVEDELKFKPFTGSGKRLDGKASKLQATEVPSASRSSPSDSNKR 318
>02_01_0610 +
4564016-4564018,4564166-4564243,4564764-4564788,
4564870-4564902,4565034-4565155,4565230-4565360,
4565509-4565732,4565824-4566065,4566268-4566357
Length = 315
Score = 153 bits (372), Expect = 1e-37
Identities = 95/231 (41%), Positives = 131/231 (56%), Gaps = 19/231 (8%)
Frame = -2
Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
WMM NL+L EG ++ I++ +LP T+ K QP + DFLDI+NPKA+LE LRN+SCLTTGD
Sbjct: 87 WMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGD 146
Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDE 363
I + YN+K Y + ++ETKP NA+ IIE D V+FAPP+ YKE + + + E
Sbjct: 147 SIMVAYNNKKYYIDIVETKPSNAISIIETDCEVDFAPPLDYKEPERQKAAVPPSTAPTAE 206
Query: 362 DPAAMMPESSGFRAFSGEGNRLDGK--KKKLISESDS-----------EPGTSQPRQSYV 222
+ A P+ F F+G G RLDGK K K +S S +P T+ QS
Sbjct: 207 EAAEEEPK---FIPFTGPGRRLDGKAPKDKDVSASSPAKRQANATNSVQPSTASTSQSSS 263
Query: 221 RGIPDYDFVIGT--LRFIRNSR--PAKDPKEE-AQTEP-FQAFTGEGFTLR 87
V G R + + P K+PKE+ + EP F AFTG ++L+
Sbjct: 264 SRKTTEKLVFGPGGNRTSKETEKVPEKEPKEDPKKDEPKFSAFTGRKYSLK 314
>09_04_0593 - 18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 149 bits (362), Expect = 2e-36
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Frame = -2
Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
WMM + L++G L+ + S SLP +++K QP + DFLD NPKAVLE LR+F+CLTTGD
Sbjct: 566 WMMRGMRLDDGGLVVVRSASLPKGSYAKLQPHTGDFLDTANPKAVLEKTLRSFTCLTTGD 625
Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDE 363
I + YN+K + + ++ETKP +AV IIE D V+FAPP+ YKE + V +
Sbjct: 626 TIMVAYNNKEFLIDIVETKPASAVCIIETDCEVDFAPPLDYKEPEKVQQKPSVPSSKAAS 685
Query: 362 DPAAMMPESSGFRAFSGEGNRLDGK-KKKLISESDSEPGTS 243
+ + + FRAF+G GNRLDGK K L + S P +
Sbjct: 686 EDQDQIKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAA 726
>01_01_0293 -
2399945-2400395,2400927-2401057,2401184-2401305,
2401423-2401455,2401556-2401661,2401882-2401884
Length = 281
Score = 93.5 bits (222), Expect = 2e-19
Identities = 54/150 (36%), Positives = 81/150 (54%)
Frame = -2
Query: 725 TWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTG 546
T MM +L L E L+ + S S+P ATF K QP + DF ++ P+ +LE RN+ CLTTG
Sbjct: 87 TMMMEHLGLRENDLVLLRSTSIPKATFIKLQPHTSDFHKLSEPRYLLEYNFRNYFCLTTG 146
Query: 545 DVIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMD 366
+ IA+ + Y L V+ET+P +AV +IE D VEF + E + V +
Sbjct: 147 ETIAVAAGDRFYYLDVVETRPADAVCVIETDCEVEFDQALDQAEPAAAAAMQVDGVGAGE 206
Query: 365 EDPAAMMPESSGFRAFSGEGNRLDGKKKKL 276
+PA +GFR +G ++ +KK +
Sbjct: 207 PEPARF----TGFR-MRMDGKPVEEEKKTM 231
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/86 (39%), Positives = 52/86 (60%)
Frame = -2
Query: 686 LIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYE 507
LI++ VSLP T++K +P F D+ N +AVLE LRN + L+ D + + Y Y+
Sbjct: 173 LIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETALRNHATLSENDFVVVNYGQLQYK 232
Query: 506 LCVLETKPGNAVIIIECDMNVEFAPP 429
L VLE KP ++V ++E D+ V+ P
Sbjct: 233 LKVLELKPASSVSVLETDVEVDIEGP 258
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -2
Query: 425 GYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGT 246
G + V G+VEG DED + G G + DGK+KK + +S GT
Sbjct: 272 GAVREAEVDHDGTGSVEGGDEDDDNADDLDDDYP--PGMGGKKDGKEKKDSPKKESPKGT 329
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 575 LRNFSCLTTGDVIAIKYNSKV--YELCVLETKPGNAVIIIECDMNV 444
L+NFSC + DVI+ Y SK+ E+ + A+I IE +++
Sbjct: 1149 LQNFSCFPSDDVISSGYGSKIENIEMSSSGKRTEYAIICIELALSL 1194
>06_03_0208 -
17941468-17941507,17942073-17942148,17943442-17943514,
17944023-17944106,17945335-17945481,17945839-17945863,
17945966-17946420
Length = 299
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 389 DGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDG-KKKKLISESDSEPGTSQPRQSYVRGI 213
D V+G DE+ A PE R +GE +DG ++ L+ S P + R R
Sbjct: 104 DVLVDGEDEEDARS-PEFMALRVVAGEDRAVDGLHRRPLLPPPASHPALREGRAFRSRFT 162
Query: 212 PDYD 201
P D
Sbjct: 163 PAID 166
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 484 GLVSRTHSS*TFELYFIAMTSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGS 663
GLV+RT L + + K + ++ + AFG ++ S+DK L NVA +
Sbjct: 354 GLVARTVGDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVAL-N 412
Query: 664 DTLSICIKAPSSRTR 708
LS + PS+ +
Sbjct: 413 FMLSALVNDPSNHVK 427
>03_05_1147 - 30744180-30744350,30744439-30744924
Length = 218
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -2
Query: 371 MDEDPAAMMP----ESSGFRAFSGEGNRLDGKKKKLISESDSEP 252
MD+ PA +P ++ A +G G +L G +KL + SEP
Sbjct: 68 MDKKPAKNLPVPPAAAAAAAAKNGSGGKLPGLSRKLFQKGSSEP 111
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 7.0
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Frame = -2
Query: 374 GMDEDPAAMMPESSGF-------RAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRG 216
G DED A PE+ R+ G + S S SE +S S
Sbjct: 70 GEDEDNNATPPEAPAASSLKDRQRSSHGTDTSSSSESSSSSSSSSSESSSSSSSSSSESS 129
Query: 215 IPDYDFVIGTLRFIRNSRPAKDPKEEAQTEPFQAFTGEGFTLRTAKSKN*NWFSVS 48
D + R RN P K+EA+ P + T ++ S +W++ S
Sbjct: 130 SSSSDDDLARRRQQRNPSPPPQYKKEARRSPSPSPPSSSSTSSSSSSSGSSWWTRS 185
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = -2
Query: 224 VRGIPDYDFVIGTLRFIRNSRPAKDPKEEAQTEPFQAFTGEGF--TLRT----AKSKN*N 63
+ +P ++ L + PAKDP+ + T P +A T LR+ +K KN
Sbjct: 534 IEEVPGLEWDGTDLEIFEDPSPAKDPEVQETTVPEKATTSSEVPRVLRSHDSKSKDKNKE 593
Query: 62 WFSVSVHRG 36
F V+V RG
Sbjct: 594 KFMVTVFRG 602
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -2
Query: 443 EFAPPVGYKEQDHVS--RSNDGAVE-GMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLI 273
E AP K++ S +SN VE G P + S R DG KK
Sbjct: 123 EIAPERQRKDKSDKSGRKSNKDEVEPGEVAPPDKKQDRDHNKKLGSSAQVRDDGSKKGSS 182
Query: 272 SESDSEPGTSQPRQS 228
+SD EPG +P S
Sbjct: 183 RDSDEEPGEIRPESS 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,568,449
Number of Sequences: 37544
Number of extensions: 424460
Number of successful extensions: 1144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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