Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05r
         (756 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p pro...   229   2e-60
AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin fu...   229   2e-60
AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin fu...   229   2e-60
AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA...   229   2e-60
BT029922-1|ABM92796.1|  348|Drosophila melanogaster IP05277p pro...    29   6.8  
AE014296-889|AAN11613.1|  328|Drosophila melanogaster CG32234-PA...    29   6.8  

>AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p
           protein.
          Length = 316

 Score =  229 bits (561), Expect = 2e-60
 Identities = 124/227 (54%), Positives = 143/227 (62%), Gaps = 12/227 (5%)
 Frame = -2

Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
           WMM NL+L EG ++ IESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GD
Sbjct: 94  WMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGD 153

Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AV 378
           VIAIKYN KVYELCVLETKPGNAV IIECDMNVEF  PVGYK+      S  G       
Sbjct: 154 VIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGT 213

Query: 377 EGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDF 198
            G +   A           F G G RLDGKKKK     +S+  T   ++   RG+PDYDF
Sbjct: 214 VGGEIAGATNAILEEVVETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDF 268

Query: 197 VIGTLRFIRNSRPAKDPKEE-------AQTEPFQAFTGEGFTLRTAK 78
             G +RF RN RP  D  +E       A     ++F G GF+++  +
Sbjct: 269 QFGLIRFDRNIRPISDRSQEDDAVAGNADASDAESFHGTGFSMKKTR 315


>AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  229 bits (561), Expect = 2e-60
 Identities = 124/227 (54%), Positives = 143/227 (62%), Gaps = 12/227 (5%)
 Frame = -2

Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
           WMM NL+L EG ++ IESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GD
Sbjct: 94  WMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGD 153

Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AV 378
           VIAIKYN KVYELCVLETKPGNAV IIECDMNVEF  PVGYK+      S  G       
Sbjct: 154 VIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGT 213

Query: 377 EGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDF 198
            G +   A           F G G RLDGKKKK     +S+  T   ++   RG+PDYDF
Sbjct: 214 VGGEIAGATNAILEEVVETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDF 268

Query: 197 VIGTLRFIRNSRPAKDPKEE-------AQTEPFQAFTGEGFTLRTAK 78
             G +RF RN RP  D  +E       A     ++F G GF+++  +
Sbjct: 269 QFGLIRFDRNIRPISDRSQEDDAVAGNADASDAESFHGTGFSMKKTR 315


>AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  229 bits (561), Expect = 2e-60
 Identities = 124/227 (54%), Positives = 143/227 (62%), Gaps = 12/227 (5%)
 Frame = -2

Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
           WMM NL+L EG ++ IESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GD
Sbjct: 94  WMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGD 153

Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AV 378
           VIAIKYN KVYELCVLETKPGNAV IIECDMNVEF  PVGYK+      S  G       
Sbjct: 154 VIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGT 213

Query: 377 EGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDF 198
            G +   A           F G G RLDGKKKK     +S+  T   ++   RG+PDYDF
Sbjct: 214 VGGEIAGATNAILEEVVETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDF 268

Query: 197 VIGTLRFIRNSRPAKDPKEE-------AQTEPFQAFTGEGFTLRTAK 78
             G +RF RN RP  D  +E       A     ++F G GF+++  +
Sbjct: 269 QFGLIRFDRNIRPISDRSQEDDAVAGNADASDAESFHGTGFSMKKTR 315


>AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA
           protein.
          Length = 316

 Score =  229 bits (561), Expect = 2e-60
 Identities = 124/227 (54%), Positives = 143/227 (62%), Gaps = 12/227 (5%)
 Frame = -2

Query: 722 WMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGD 543
           WMM NL+L EG ++ IESVSLPVATFSKFQP S DFLDITNPKAVLEN LRNF+CLT GD
Sbjct: 94  WMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGD 153

Query: 542 VIAIKYNSKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDG-----AV 378
           VIAIKYN KVYELCVLETKPGNAV IIECDMNVEF  PVGYK+      S  G       
Sbjct: 154 VIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGT 213

Query: 377 EGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQSYVRGIPDYDF 198
            G +   A           F G G RLDGKKKK     +S+  T   ++   RG+PDYDF
Sbjct: 214 VGGEIAGATNAILEEVVETFKGSGVRLDGKKKK-----ESQLETPVVKKVLARGVPDYDF 268

Query: 197 VIGTLRFIRNSRPAKDPKEE-------AQTEPFQAFTGEGFTLRTAK 78
             G +RF RN RP  D  +E       A     ++F G GF+++  +
Sbjct: 269 QFGLIRFDRNIRPISDRSQEDDAVAGNADASDAESFHGTGFSMKKTR 315


>BT029922-1|ABM92796.1|  348|Drosophila melanogaster IP05277p
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -2

Query: 473 VIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA------FSG 312
           VII+ C +   +   + YK++  + R  D  +    E  A  M ES G +A       +G
Sbjct: 128 VIIVICCLLEVYRSHLAYKKR--IERETDEDIIWSKEQ-ATKMHESPGVKAGLLGGVTAG 184

Query: 311 EGNRLDGKKKKLISESDSEPGTSQP 237
            GN L     K + + D +PG   P
Sbjct: 185 SGNGLPPYTYKALPQEDKKPGNGAP 209


>AE014296-889|AAN11613.1|  328|Drosophila melanogaster CG32234-PA
           protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -2

Query: 473 VIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRA------FSG 312
           VII+ C +   +   + YK++  + R  D  +    E  A  M ES G +A       +G
Sbjct: 93  VIIVICCLLEVYRSHLAYKKR--IERETDEDIIWSKEQ-ATKMHESPGVKAGLLGGVTAG 149

Query: 311 EGNRLDGKKKKLISESDSEPGTSQP 237
            GN L     K + + D +PG   P
Sbjct: 150 SGNGLPPYTYKALPQEDKKPGNGAP 174


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,497,630
Number of Sequences: 53049
Number of extensions: 728167
Number of successful extensions: 1967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1958
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)