Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05r
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.14 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 532 IAMTSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDT 669
           I++T+   K  KLR     ++   V+S +   KGW+  N+  G+++
Sbjct: 228 ISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNES 273


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 650 TFSKFQPLSEDFLDITNPKAVLENCLRNF--SCLTTGD 543
           T   +QP  E+  + T    VLE C RN   S +T G+
Sbjct: 195 THIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGN 232


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 565 KLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSIC 681
           KL + F N  F F M  K  +     E V  G + +++C
Sbjct: 74  KLLRTFKNGNFDFDMIVKQLEITMPPEEVVIGKEIVAVC 112


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -3

Query: 178 LSEIQDQPKTLKRRLKPNLFKHLQAKDLHCVLPSLRTKTGFLYQYIVVYVWLE 20
           +SE++   +     LKPN    +  ++   V     T+TG    ++ +  W+E
Sbjct: 466 ISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIE 518


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 182 RFIRNSRPAKDPKEEAQTE 126
           RF+   RP KD  EE + E
Sbjct: 347 RFLLIERPKKDEDEEEEEE 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,260
Number of Sequences: 438
Number of extensions: 4917
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)