Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f05f
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 192 3e-50
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.25
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 4.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 5.3
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 25 7.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.1
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 192 bits (469), Expect = 3e-50
Identities = 85/165 (51%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Frame = +2
Query: 152 FHE-ISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTN 328
FH +++ F+ YRCY V+M+PG ER +V GGK+I+PPSALE+L+RLN+ YPM+F N
Sbjct: 24 FHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFEN 83
Query: 329 KKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSED 508
+ +++ TH GVLEF+A+EGRVYLP+WMM L LE G L+++ + + ++ K QP S +
Sbjct: 84 EAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVN 143
Query: 509 FLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
FLDIT+ +AVLEN LRNFS LT D+ I YN +VY++ V++ +P
Sbjct: 144 FLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQP 188
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -1
Query: 579 PVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRF 415
P + ++ L +FS+ F F+ +K + + +N+ SD + IK P++ T F
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFNISAYVDTSDLPILFIKHPNNGTSF 231
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 327 FVNLNIIGYSILSLVSCSNADGGIIIL 247
F + N++G S L+SCS+ +G I IL
Sbjct: 203 FSSWNVVGDSATCLLSCSSRNGEIRIL 229
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 473 ATFSKFQPLSEDFLDITNPKAVL 541
A SK P SEDF+DIT P +L
Sbjct: 491 ANSSKPIPDSEDFMDITRPFNIL 513
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 345 SLFDFLFVNLNIIGYSILSLVSCSNA 268
SLF LFVN+ ++ + S S SNA
Sbjct: 112 SLFTGLFVNVALVDFDFRSEASASNA 137
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 389 VYLPHWMMANLVLEEGALIQIESVSLPVAT 478
+YL W+ AN+ L + QIE +L T
Sbjct: 1121 IYLMPWIAANMDLAKNVQTQIEHTTLSTVT 1150
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 9.3
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = +2
Query: 218 NERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYL 397
N Q+ G II P+ L EY + + N S +++D+ L
Sbjct: 968 NFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSS----------YISDQNLELL 1017
Query: 398 PHWMMANLVLEEGALIQIE-SVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLT 574
P + VL+E I E +V L + SE L +T + +LEN L +FSC
Sbjct: 1018 PDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSE--LVLT--ELILENSLADFSCEE 1073
Query: 575 T 577
T
Sbjct: 1074 T 1074
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.3
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -1
Query: 555 RKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRFAIIQCGRYTLPSS 376
R+ FS +F S S N ++ A+ S TL+ + R R Q RYTLPS
Sbjct: 108 RRFFSEGSFNLPNSNMSHSL--NGDSTASNSSTLTPN-RIYGDRNRQDYAQSSRYTLPSL 164
Query: 375 ATNSS 361
++ S
Sbjct: 165 PSSPS 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,976
Number of Sequences: 5004
Number of extensions: 51617
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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