Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f05f
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456... 194 4e-50
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623... 189 2e-48
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 177 5e-45
01_01_0293 - 2399945-2400395,2400927-2401057,2401184-2401305,240... 142 2e-34
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 80 2e-15
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 29 4.2
12_02_0820 + 23437811-23440230,23440336-23440534 28 5.5
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 7.3
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 27 9.7
>02_01_0610 +
4564016-4564018,4564166-4564243,4564764-4564788,
4564870-4564902,4565034-4565155,4565230-4565360,
4565509-4565732,4565824-4566065,4566268-4566357
Length = 315
Score = 194 bits (474), Expect = 4e-50
Identities = 85/157 (54%), Positives = 119/157 (75%)
Frame = +2
Query: 173 FNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTH 352
F TYRCY S + ++ +E G KIIMPPSAL++L L+IEYPM+F++ N ++R +H
Sbjct: 13 FEQTYRCYPASFI---DKPQLETGDKIIMPPSALDRLASLHIEYPMLFEVHNAAAERTSH 69
Query: 353 CGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPK 532
CGVLEF+A+EG +Y+P+WMM NL+L EG ++ I++ +LP T+ K QP + DFLDI+NPK
Sbjct: 70 CGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNPK 129
Query: 533 AVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
A+LE LRN+SCLTTGD I + YN+K Y + ++ETKP
Sbjct: 130 AILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKP 166
>04_04_0882 +
29061504-29061512,29061852-29061964,29062371-29062398,
29062690-29062734,29063379-29063456,29063573-29063597,
29063690-29063722,29063793-29063914,29064015-29064145,
29064242-29064468,29065175-29065431,29065859-29065945
Length = 384
Score = 189 bits (460), Expect = 2e-48
Identities = 85/173 (49%), Positives = 125/173 (72%)
Frame = +2
Query: 125 EMFQFGFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 304
+MF G+ +H + F TYRCY S ++ +E G K+IMPPSAL++L L+IEY
Sbjct: 64 KMFYAGYG-YHGSN--FEQTYRCYPASFF---DKPHLEGGDKVIMPPSALDRLASLHIEY 117
Query: 305 PMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFS 484
PM+F+L N ++R++HCGVLEFVA+EG + +P+WMM N++L+EG +++++ +LP T+
Sbjct: 118 PMLFELHNDATQRISHCGVLEFVAEEGMIIMPYWMMQNMLLQEGDTVRVKNTTLPKGTYV 177
Query: 485 KFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
K QP + DFLDI+NPKA+LE LR SC+TTGD I + YN+K Y + ++ETKP
Sbjct: 178 KLQPHTTDFLDISNPKAILEKTLRKLSCITTGDSIMVAYNNKQYYIDIVETKP 230
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 177 bits (432), Expect = 5e-45
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Frame = +2
Query: 143 FNMFH-EISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFK 319
F+ FH R F TYRCYS + + +E G K+IMP SAL +L L+I+YPM+F+
Sbjct: 478 FSSFHGHGGRGFEQTYRCYSAAAF---NKPQLEGGDKVIMPASALHRLASLHIDYPMLFE 534
Query: 320 LTNK---KSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKF 490
L++ + R+THCGVLEFVADEG V +P WMM + L++G L+ + S SLP +++K
Sbjct: 535 LSHHGDAAAHRVTHCGVLEFVADEGTVIMPRWMMRGMRLDDGGLVVVRSASLPKGSYAKL 594
Query: 491 QPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
QP + DFLD NPKAVLE LR+F+CLTTGD I + YN+K + + ++ETKP
Sbjct: 595 QPHTGDFLDTANPKAVLEKTLRSFTCLTTGDTIMVAYNNKEFLIDIVETKP 645
>01_01_0293 -
2399945-2400395,2400927-2401057,2401184-2401305,
2401423-2401455,2401556-2401661,2401882-2401884
Length = 281
Score = 142 bits (344), Expect = 2e-34
Identities = 68/160 (42%), Positives = 104/160 (65%)
Frame = +2
Query: 164 SRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKR 343
S F YRC +S+L ++++ + G ++ MP SAL++L L+IEYPM F++ N + +
Sbjct: 11 SATFAQLYRCLPISLL---KKENADDGNRVFMPVSALDRLGYLHIEYPMQFQIQNATTLQ 67
Query: 344 LTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDIT 523
++CGVLEF ADEG +++P MM +L L E L+ + S S+P ATF K QP + DF ++
Sbjct: 68 TSYCGVLEFTADEGFIHIPTMMMEHLGLRENDLVLLRSTSIPKATFIKLQPHTSDFHKLS 127
Query: 524 NPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
P+ +LE RN+ CLTTG+ IA+ + Y L V+ET+P
Sbjct: 128 EPRYLLEYNFRNYFCLTTGETIAVAAGDRFYYLDVVETRP 167
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 79.8 bits (188), Expect = 2e-15
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 16/150 (10%)
Frame = +2
Query: 242 GGKIIMPPSALEQLTRLNI--EYPMIFKLTNKKSK-----------RLTHCGVLEFVADE 382
G KI +PPS+ ++L+ + PM F+L+ + T CGVLEF A E
Sbjct: 91 GDKIKLPPSSFKELSDEGALDKGPMYFRLSKVRDSVPGAPQDNDADEATCCGVLEFTARE 150
Query: 383 GRVYLPHWMMANLVLEEGA---LIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCL 553
G L + NL + LI++ VSLP T++K +P F D+ N +AVLE L
Sbjct: 151 GSAELTPHVWNNLFRGDSPDVPLIEVRYVSLPKGTYAKLKPEGVGFSDLPNHRAVLETAL 210
Query: 554 RNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
RN + L+ D + + Y Y+L VLE KP
Sbjct: 211 RNHATLSENDFVVVNYGQLQYKLKVLELKP 240
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 339 FDFLFVNLNIIGYSILSLVSCSNADGGIIILPPLSTSCLSFPG 211
+D LF NI +++ S+ + + A G+++LP +S +S G
Sbjct: 438 WDELFGEGNIPAFAMASVFAAAAAAAGVVLLPKVSVRSVSMAG 480
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -1
Query: 642 GLVSRTHSS*TFELYFIAMTSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGS 463
GLV+RT L + + K + ++ + AFG ++ S+DK L NVA +
Sbjct: 354 GLVARTVGDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVAL-N 412
Query: 462 DTLSICIKAPSSRTR 418
LS + PS+ +
Sbjct: 413 FMLSALVNDPSNHVK 427
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 551 LRNFSCLTTGDVIAIKYNSKV 613
L+NFSC + DVI+ Y SK+
Sbjct: 1149 LQNFSCFPSDDVISSGYGSKI 1169
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 425 LEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPK 532
L E + + ++P TFS F L+E F+ T+PK
Sbjct: 180 LHESSSSSDDDNAVPSPTFSLFLALAEQFVPFTHPK 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,210
Number of Sequences: 37544
Number of extensions: 283955
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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