Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f05f
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2727| Best HMM Match : UFD1 (HMM E-Value=0) 163 8e-41
SB_8403| Best HMM Match : Tenui_NCP (HMM E-Value=1) 30 1.4
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.4
SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05) 29 4.3
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08) 29 4.3
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20) 27 9.9
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07) 27 9.9
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_2727| Best HMM Match : UFD1 (HMM E-Value=0)
Length = 248
Score = 163 bits (397), Expect = 8e-41
Identities = 91/178 (51%), Positives = 110/178 (61%), Gaps = 13/178 (7%)
Frame = +2
Query: 149 MFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTN 328
MF + R F YRCYSV+MLPGNER+DVERGGK TRLNI YPM+FKLTN
Sbjct: 1 MFEPMPRVFKTQYRCYSVAMLPGNERKDVERGGK-----------TRLNIVYPMLFKLTN 49
Query: 329 KKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSED 508
+ R THCGVLEFVADEG++YLPHW + V ++IE S + L+ +
Sbjct: 50 NRIDRSTHCGVLEFVADEGKIYLPHWTSVD-VYHVSPTLEIERFSPFADCYVMCSQLNNE 108
Query: 509 FL---------DITNPKAV----LENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
L D N +A LEN LR+F+CLTTGD+IAIKYN K+YE V+ETKP
Sbjct: 109 RLAPVLQKLAPDSRNSRAYLGASLENALRSFACLTTGDIIAIKYNDKIYEFLVMETKP 166
>SB_8403| Best HMM Match : Tenui_NCP (HMM E-Value=1)
Length = 424
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +2
Query: 401 HWMMANLVLEEGALIQIESVSLPVATFSKFQPLSE--DFLDITNPKAVLENCLRNFSCLT 574
HW + EE A ++I + +A + PL E D L P V E CLR++ L
Sbjct: 222 HWRLLEKDYEERATMRILTYLEEMAWDYQRVPLDECCDGLKELQPSFVTEYCLRHYGKLC 281
Query: 575 TGDVIAIKYNSKVYELC 625
G + + Y+ ++C
Sbjct: 282 DGCMEEVHYHLLEDKIC 298
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -1
Query: 471 TGSDTLSICIKA--PSSRTRF-AIIQCGRYTLPSSATNSSTP 355
T + S+ +KA ++RTRF A +CGR T+P +T+S TP
Sbjct: 616 TYDNLCSLRLKACTDNTRTRFKAFGECGRTTVPPVSTSSPTP 657
>SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 585 TSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRFAII 406
TSP +K +KL+ +NT+FG S + L VA+ + L + RTR A +
Sbjct: 56 TSPKMKVKKLKSLPANTSFGGQESVVEIESEERLRRVASANHALPSLATSTPPRTRRATL 115
>SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05)
Length = 471
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Frame = +3
Query: 3 ICS-LSKDKCVE---LLYIVHELH*INFLILTNK---SSDICLN*RKSKCFNSDSICFTK 161
ICS S+ KC+ L Y+ +++H +L ++ S+ IC + ++KC D I + K
Sbjct: 168 ICSSTSRTKCISPDLLFYLTNKVHQARSALLPHEQSASAPICSSTSRTKCIRPDLIFYLK 227
Query: 162 YLGH 173
H
Sbjct: 228 NKVH 231
>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
Length = 1420
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 262 GHNYFTTSFNVLSLIPR*HRD*IASISHIKWPRYFVKHIESELKH 128
G +Y S +++ + HRD + W + F+ H++S +KH
Sbjct: 803 GTDYNNASALIITFVVENHRDEKKNAKAESWEKAFIDHMKSYVKH 847
>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
Length = 704
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 344 LTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDIT 523
+T C +L+F AD G VY P AN E + + + T K + +
Sbjct: 452 ITECALLQFTADLG-VYYPFIREANPCEEFSKVFPFSPETRSMTTVVKENATYKVYCK-G 509
Query: 524 NPKAVLENCLR 556
+P+ VL C+R
Sbjct: 510 SPEVVLPRCVR 520
>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
Length = 1054
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Frame = +2
Query: 95 FRYLLKLTKIEMFQFGFNMFHEI---------SRPFNMTYRCYSVSMLPGNERQDVERGG 247
++YLLK + I QFGF H S NM + +++ +L D+++
Sbjct: 728 YKYLLKNSLISNHQFGFRRLHSTMSALLDCTNSWLINMDRKMFNLVVL-----LDLKKAF 782
Query: 248 KIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMAN 418
+ P L ++ L I + + + + S R C V E ++ E + P N
Sbjct: 783 DTVDPEILLRKMQILGISHDALSLIKSYLSGRKQVCQVNESLSSESHITNPAMKWTN 839
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 518 ITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+++ K +LEN + L TG+++ Y E+C+L P
Sbjct: 278 MSSGKELLENVTNSSLALVTGNILKFTYECDGSEICLLAKIP 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,638,829
Number of Sequences: 59808
Number of extensions: 363544
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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