Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f05f
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456607-1|CAG30493.1| 307|Homo sapiens UFD1L protein. 271 2e-72
BC005087-1|AAH05087.1| 307|Homo sapiens ubiquitin fusion degrad... 271 2e-72
BC001049-1|AAH01049.1| 307|Homo sapiens ubiquitin fusion degrad... 271 2e-72
AY101594-1|AAM48288.1| 307|Homo sapiens ubiquitin fusion degrad... 271 2e-72
AJ239058-1|CAC20414.1| 307|Homo sapiens ubiquitin fusion degrad... 271 2e-72
AF141201-1|AAD28788.1| 307|Homo sapiens ubiquitin fusion-degrad... 271 2e-72
U64444-1|AAD08720.1| 343|Homo sapiens ubiquitin fusion-degradat... 172 8e-43
>CR456607-1|CAG30493.1| 307|Homo sapiens UFD1L protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>BC005087-1|AAH05087.1| 307|Homo sapiens ubiquitin fusion
degradation 1 like (yeast) protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>BC001049-1|AAH01049.1| 307|Homo sapiens ubiquitin fusion
degradation 1 like (yeast) protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>AY101594-1|AAM48288.1| 307|Homo sapiens ubiquitin fusion
degradation 1-like protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>AJ239058-1|CAC20414.1| 307|Homo sapiens ubiquitin fusion
degradation 1 protein protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>AF141201-1|AAD28788.1| 307|Homo sapiens ubiquitin
fusion-degradation 1 protein protein.
Length = 307
Score = 271 bits (664), Expect = 2e-72
Identities = 131/175 (74%), Positives = 147/175 (84%), Gaps = 6/175 (3%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEEG L+Q+ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 479 FSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
+SKFQP S DFLDITNPKAVLEN LRNF+CLTTGDVIAI YN K+YEL V+ETKP
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKP 176
>U64444-1|AAD08720.1| 343|Homo sapiens ubiquitin fusion-degradation
1 like protein protein.
Length = 343
Score = 172 bits (419), Expect = 8e-43
Identities = 85/123 (69%), Positives = 99/123 (80%), Gaps = 6/123 (4%)
Frame = +2
Query: 137 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 298
F FNMF H I R F + YRC+SVSML N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAWPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 299 EYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVAT 478
YPM+FKLTNK S R+THCGVLEFVADEG YLPHWMM NL+LEE L+Q+E+V+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEDGLVQLETVNLQVAT 121
Query: 479 FSK 487
+SK
Sbjct: 122 YSK 124
Score = 149 bits (360), Expect = 1e-35
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +2
Query: 392 YLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCL 571
YLPHWMM NL+LEEG L+Q+ESV+L VAT+SKFQP S DFLDITNPKAVLEN LRNF+CL
Sbjct: 129 YLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSADFLDITNPKAVLENALRNFACL 188
Query: 572 TTGDVIAIKYNSKVYELCVLETKP 643
TTGDVIAI YN K+YEL V+ETKP
Sbjct: 189 TTGDVIAINYNEKIYELRVMETKP 212
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,491,610
Number of Sequences: 237096
Number of extensions: 1591209
Number of successful extensions: 2503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2496
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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