Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05f
         (645 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p pro...   283   2e-76
AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin fu...   283   2e-76
AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin fu...   283   2e-76
AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA...   283   2e-76
U43504-1|AAC46955.1|  618|Drosophila melanogaster DmORC2 protein.      31   1.8  
AY051471-1|AAK92895.1|  618|Drosophila melanogaster GH13824p pro...    31   1.8  
AF246305-1|AAF99606.1|  618|Drosophila melanogaster ORC2 protein.      31   1.8  
AE014297-1778|AAF55006.1|  618|Drosophila melanogaster CG3041-PA...    31   1.8  

>AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p
           protein.
          Length = 316

 Score =  283 bits (693), Expect = 2e-76
 Identities = 133/173 (76%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
 Frame = +2

Query: 128 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 304
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 305 PMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFS 484
           PM+FKLTN K  R +H GVLEFVADEG+ YLPHWMM NL+L EG ++ IESVSLPVATFS
Sbjct: 61  PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120

Query: 485 KFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
           KFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVLETKP
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKP 173


>AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  283 bits (693), Expect = 2e-76
 Identities = 133/173 (76%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
 Frame = +2

Query: 128 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 304
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 305 PMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFS 484
           PM+FKLTN K  R +H GVLEFVADEG+ YLPHWMM NL+L EG ++ IESVSLPVATFS
Sbjct: 61  PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120

Query: 485 KFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
           KFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVLETKP
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKP 173


>AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  283 bits (693), Expect = 2e-76
 Identities = 133/173 (76%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
 Frame = +2

Query: 128 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 304
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 305 PMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFS 484
           PM+FKLTN K  R +H GVLEFVADEG+ YLPHWMM NL+L EG ++ IESVSLPVATFS
Sbjct: 61  PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120

Query: 485 KFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
           KFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVLETKP
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKP 173


>AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA
           protein.
          Length = 316

 Score =  283 bits (693), Expect = 2e-76
 Identities = 133/173 (76%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
 Frame = +2

Query: 128 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 304
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 305 PMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFS 484
           PM+FKLTN K  R +H GVLEFVADEG+ YLPHWMM NL+L EG ++ IESVSLPVATFS
Sbjct: 61  PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120

Query: 485 KFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
           KFQP S DFLDITNPKAVLEN LRNF+CLT GDVIAIKYN KVYELCVLETKP
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKP 173


>U43504-1|AAC46955.1|  618|Drosophila melanogaster DmORC2 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 248 KIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVL 427
           KI+     L++L    +    +F L ++      H G +  + +E R Y P WM    +L
Sbjct: 291 KILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM---CIL 347

Query: 428 EEG 436
            EG
Sbjct: 348 NEG 350


>AY051471-1|AAK92895.1|  618|Drosophila melanogaster GH13824p
           protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 248 KIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVL 427
           KI+     L++L    +    +F L ++      H G +  + +E R Y P WM    +L
Sbjct: 291 KILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM---CIL 347

Query: 428 EEG 436
            EG
Sbjct: 348 NEG 350


>AF246305-1|AAF99606.1|  618|Drosophila melanogaster ORC2 protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 248 KIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVL 427
           KI+     L++L    +    +F L ++      H G +  + +E R Y P WM    +L
Sbjct: 291 KILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM---CIL 347

Query: 428 EEG 436
            EG
Sbjct: 348 NEG 350


>AE014297-1778|AAF55006.1|  618|Drosophila melanogaster CG3041-PA
           protein.
          Length = 618

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 248 KIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVL 427
           KI+     L++L    +    +F L ++      H G +  + +E R Y P WM    +L
Sbjct: 291 KILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM---CIL 347

Query: 428 EEG 436
            EG
Sbjct: 348 NEG 350


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,986,787
Number of Sequences: 53049
Number of extensions: 524117
Number of successful extensions: 1289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)