Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05f
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical pr...   155   3e-38
Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical pr...   152   2e-37
Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical p...    29   3.7  
AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical
           protein F19B6.2a protein.
          Length = 342

 Score =  155 bits (375), Expect = 3e-38
 Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
 Frame = +2

Query: 173 FNMTYRCYSVSMLPG---NERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKR 343
           ++ T+  Y    LP    ++  ++  GGKI++P SAL  L + NI  PM+FKLTN   +R
Sbjct: 21  YDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQR 80

Query: 344 LTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDIT 523
           +THCGVLEF A EG+  LP WMM  L L++G  I+IES +LP ATF+K +P+S +FL+IT
Sbjct: 81  VTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNIT 140

Query: 524 NPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 643
           NPKAVLE  LR ++CLT  D I   Y  +  E  V++ KP
Sbjct: 141 NPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKP 180


>Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical
           protein F19B6.2b protein.
          Length = 336

 Score =  152 bits (369), Expect = 2e-37
 Identities = 73/138 (52%), Positives = 96/138 (69%)
 Frame = +2

Query: 230 DVERGGKIIMPPSALEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWM 409
           ++  GGKI++P SAL  L + NI  PM+FKLTN   +R+THCGVLEF A EG+  LP WM
Sbjct: 37  EINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWM 96

Query: 410 MANLVLEEGALIQIESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVI 589
           M  L L++G  I+IES +LP ATF+K +P+S +FL+ITNPKAVLE  LR ++CLT  D I
Sbjct: 97  MQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRI 156

Query: 590 AIKYNSKVYELCVLETKP 643
              Y  +  E  V++ KP
Sbjct: 157 PTSYAGQTLEFLVVDLKP 174


>Z81493-10|CAB04044.2|  508|Caenorhabditis elegans Hypothetical
           protein F01D5.9 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 302 YPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEG 436
           YPM+  LT + +K++     L   + E  ++LP W+   L+L  G
Sbjct: 87  YPMVIVLTPEANKKVLESNALINKSSEYDIFLP-WLGTGLLLASG 130


>AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical
           protein C54F6.4 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +2

Query: 302 YPMIFKLTNKKS-----KRLTHCGVLE-FVADEGRVYLPHWMMANLVLEEGALIQIESVS 463
           +P+IF    KK       R  H G +  F    G + LP W+    +  +  LI I    
Sbjct: 5   FPIIFSTELKKPICLQIYRQGHVGDISGFPFLMGTLVLPFWLRYGFLRNDVMLISINCAG 64

Query: 464 LPVATFS 484
           +P+A F+
Sbjct: 65  IPIAVFN 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,242
Number of Sequences: 27780
Number of extensions: 284806
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)