Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f05f
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.12 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   1.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 594 IAMTSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDT 457
           I++T+   K  KLR     ++   V+S +   KGW+  N+  G+++
Sbjct: 228 ISLTTHQQKRHKLRVTRCYSSDSAVLSDEDQTKGWDGSNMVEGNES 273


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 476 TFSKFQPLSEDFLDITNPKAVLENCLRNF--SCLTTGD 583
           T   +QP  E+  + T    VLE C RN   S +T G+
Sbjct: 195 THIDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGN 232


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 561 KLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSIC 445
           KL + F N  F F M  K  +     E V  G + +++C
Sbjct: 74  KLLRTFKNGNFDFDMIVKQLEITMPPEEVVIGKEIVAVC 112


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 386 RVYLPHWMMANLVLEEGALIQIESVSL 466
           +V +PH +  N   E+GAL+ + SV L
Sbjct: 165 QVKIPHDIAVNTTTEKGALVTL-SVQL 190


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 252 ILPPLSTSCLSFPGNIE 202
           + P  S+SC   PGN+E
Sbjct: 71  LYPAFSSSCDPVPGNLE 87


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 312 IIGYSILSLVSCSNADGGIIILPPLSTSCLSFPGNI 205
           I+G+ I  L   S    G+++   LST  L  P N+
Sbjct: 54  ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNL 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 138 SDSICFTKYLGHLI*LIDAIQS 203
           S + C+  +LGH   LI ++ S
Sbjct: 362 SGATCYALFLGHATNLIQSLDS 383


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 138 SDSICFTKYLGHLI*LIDAIQS 203
           S + C+  +LGH   LI ++ S
Sbjct: 330 SGATCYALFLGHATNLIQSLDS 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,771
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)