Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f04r
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.6  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   3.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.8  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   6.3  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -2

Query: 289 LMLMNFLKIFTLLM*KLQIIEFICKMCLLLLNVFSFILYRFFFMVRQCCPKLSRK*KKIF 110
           ++ +NF +++ +   +  I  F   + ++ L ++S  +  FFFM    C K S    K  
Sbjct: 1   MIYINFYELYNIKNIRPLIPSFHVCLLIMFLILYSQEILSFFFM----CSKFSMNSLKFC 56

Query: 109 YNISFKNNYD-IHTIMTEIKXL 47
              SFK  Y  +  I T I+ L
Sbjct: 57  VLFSFKTVYSLLKLIKTLIRKL 78


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 156 TMKKKRYN---IKLNTFSNNKHILHINSIICNF 245
           T K   YN   + +NT ++NK +LH+   +C +
Sbjct: 416 TWKDAGYNPELLSINTITDNKPVLHVQEDLCKW 448


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 162  KKKRYNIKLNTFSNNKHILH 221
            KKK Y++K N F  +K  LH
Sbjct: 1091 KKKFYHVKFNAFGTSKQNLH 1110


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 244 KLQIIEFICKMCLLLLNVFSFILYRFF 164
           ++QII+F+  + L     +S I +R+F
Sbjct: 222 RVQIIQFVLDLILCYFGTYSHIAFRYF 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,338
Number of Sequences: 5004
Number of extensions: 51992
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)