Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f04r
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312...    28   8.7  
08_01_0158 + 1269407-1269435,1270270-1270369,1271046-1271123,127...    28   8.7  

>11_06_0554 -
           24930437-24930552,24930878-24931079,24931164-24931269,
           24931357-24931599,24932398-24932484,24932695-24932825,
           24933177-24933183,24933695-24933789
          Length = 328

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -1

Query: 290 FNVDEFFENFH--SLNVKIANY 231
           FNV+ ++ENFH  + NVK+  Y
Sbjct: 236 FNVENYYENFHHYNFNVKMKKY 257


>08_01_0158 +
           1269407-1269435,1270270-1270369,1271046-1271123,
           1271688-1271704,1272402-1272495
          Length = 105

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 199 LNVFSFILYRFFFMVRQCC 143
           L+++SF++Y F + V+ CC
Sbjct: 28  LHLYSFVIYLFLYKVKVCC 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,597,472
Number of Sequences: 37544
Number of extensions: 253089
Number of successful extensions: 426
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)