Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f04f
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 33 0.039
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 29 0.48
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.48
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 0.83
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 28 1.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 2.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.9
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 7.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.7
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 7.7
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 32.7 bits (71), Expect = 0.039
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 415 ATQFSDSAFIAVGVPIIPFNS-ISLYVSSNARLSPLTVGATVSAPPPVFTKALGSSS 248
+T F+ + F +V +P +S + Y+ N+ L+P +GA V PP + AL S
Sbjct: 197 STNFASTTFPSVPFHPLPVDSGLQKYIDRNSNLTPPALGAGVPGPPLLVRVALALKS 253
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 29.1 bits (62), Expect = 0.48
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 65 CASPVNSDRELLPNYKCINATTERFLKP*RDP 160
C SP+N + L +Y C++ TT L +P
Sbjct: 332 CISPINHSSDNLSDYSCVSDTTTEILSNLENP 363
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.1 bits (62), Expect = 0.48
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = -2
Query: 544 NTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPII 365
N+ C E SWSR LSN + SL +S + FSD + GVP
Sbjct: 101 NSACDRYYQEALRKKSWSRSLSN-NISLSQSSSS-------PATSSFSDPKAFSAGVPKF 152
Query: 364 PFNSISLYVSSNARLS---PLTVGATVSAPPPVF-----TKALGSSSAAP 239
++ S VSS L+ ++ + PPPV+ + ALG+SS P
Sbjct: 153 TSDTSST-VSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTP 201
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 0.83
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = -2
Query: 532 SLSSCERSSNISWSRCLSNASSSLIRS---IKGCMSFAIVALATQFSDSAFIAVGVPIIP 362
S+SS SS+ S + SS +I S I G S +++T S+ +IP
Sbjct: 613 SISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIP 672
Query: 361 FNSISLYVSSNARLSPLTVGATVSAPPPVFTKALGSSSAA 242
+S + SS+ +S V ++ S+P P + + + SA+
Sbjct: 673 SSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 463 GSLRRCLSNVTRKCWNCARSWTNCRACSRT 552
G +RRC + + K +R + CR C RT
Sbjct: 475 GGIRRCANLLCNKWEEHSRQFAKCRRCRRT 504
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.9
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = -2
Query: 481 SNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFNSISLYVSSNARLSPLTVG 302
++ SSS SI S A A +T S S+ I + +S + +SS++ SPL+
Sbjct: 12 TSLSSSASSSIPASSSSA--AASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSS 69
Query: 301 ATVSAPPPVFTKALGSSSA 245
+ S F +L SSS+
Sbjct: 70 SFTSPASSSFITSLVSSSS 88
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 473 LKLPDPFD*GLHVIRHRCIGNAILRLRIHSCRSPHYTI*LDLSIR 339
LK PD + LH R + I N L C P Y + L IR
Sbjct: 950 LKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIR 994
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 5.9
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = -2
Query: 541 TLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIP 362
T C+ S SSN SR S + + + + I++L+ F V + P
Sbjct: 238 TACNRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRVFHKPEVHLDP 297
Query: 361 FNSISLYVSSNARLSPLTVG 302
SI L +SS+ S LT G
Sbjct: 298 SASI-LNLSSSHGESNLTNG 316
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.0 bits (52), Expect = 7.7
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = -2
Query: 481 SNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFN-SISLYVSSNAR-LSPLT 308
S +S+ ++ C + + LA+ DS + P + S+S SS + L+P
Sbjct: 45 STKASTSTPFVENCSNL-LCDLASIVEDSPPTLTNTSLSPHSFSLSDMESSMSNWLNPFA 103
Query: 307 VGATVSAPPPVFTKA-LGSSSAAPRCDDP 224
T+++ PP+FT +GS ++ +P
Sbjct: 104 FDNTMNSAPPLFTSTNMGSPNSLENSTNP 132
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.7
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = -2
Query: 532 SLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFNS 353
S SS SS+ S S S++SSS S S + + ++ S S+ + VPI S
Sbjct: 156 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTS 215
Query: 352 ISLYVSSNARLS 317
S SS++ S
Sbjct: 216 SSHSSSSSSSSS 227
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = -2
Query: 562 AYCWYGNTLCSLSSCERSSNIS--WSRCLSNASS------SLIRSIKGCMSFAIVALATQ 407
A W+G +CSL+ +NIS S C+ SS S++ + + I +
Sbjct: 125 ALIWFGEAVCSLNIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPVIVAM 184
Query: 406 FSDSAFIAVGV 374
++ + F A+GV
Sbjct: 185 YAWTLFAAMGV 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,454
Number of Sequences: 5004
Number of extensions: 39795
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -