Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f04f
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 30 1.5
04_03_0342 + 14648137-14648371,14648953-14649005 30 1.5
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713... 29 2.6
03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071 29 2.6
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 2.6
02_01_0082 - 564946-565075,565164-565384,565662-565916 29 3.4
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 28 4.5
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 28 4.5
02_05_0029 - 25194827-25195095,25195129-25197970 28 4.5
06_03_0143 + 17215975-17216745 28 6.0
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 28 6.0
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 6.0
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 27 7.9
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 526 SSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFS 401
S CE N +SR + SSL + KGC AIV Q S
Sbjct: 409 SECETDRNSVFSRNVKERQSSLAKGGKGCKRKAIVEFDEQSS 450
>04_03_0342 + 14648137-14648371,14648953-14649005
Length = 95
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 451 SNGSGSLRRCLSNVTRKCWNCARSWTNCRACSRTSST 561
SN SGS++RC R+C C +W A + SST
Sbjct: 26 SNRSGSIQRC----GRRCRRCQAAWRKTAASTTPSST 58
>08_02_1144 +
24670224-24670607,24670723-24670928,24671211-24671310,
24671539-24672864
Length = 671
Score = 29.1 bits (62), Expect = 2.6
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -2
Query: 541 TLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALA-TQFSDSAFIAVGVPII 365
T SLSSC + + S C S A S L SI ++ LA +D+ A+G
Sbjct: 446 TAISLSSCTKLEVLDLSGCRSIADSGL-ASISQLSKLTLLDLAGADITDAGLSALGNGRC 504
Query: 364 PFNSISL----YVSSNARLSPLTVGATVS 290
P +S+ L +S+N S L T++
Sbjct: 505 PMSSLCLRGCKRISNNGIASLLCGSGTIN 533
>03_05_0637 - 26312348-26313004,26313507-26313575,26313799-26314071
Length = 332
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 292 SAPPPVFTKALGSSSAAPRCDDPKQRLSKHTR 197
S+PPP FT G RCD +QR R
Sbjct: 230 SSPPPFFTSVGGEEQRWRRCDRTRQRTGLRLR 261
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 243 AADDEPRALVNTGGGALTVAPTVNGERRALDETYREIELNGIMGTPTAMNAESENCVANA 422
AADDE +A G A APT GE A E + ++G P A+ ++ V
Sbjct: 849 AADDEKQAASPAPGPAAAPAPTSAGEPEA--EALSRVYDATVIGEPQAVGKDARRRVWEK 906
Query: 423 TMA 431
MA
Sbjct: 907 LMA 909
>02_01_0082 - 564946-565075,565164-565384,565662-565916
Length = 201
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 261 RALVNTGGGALTVAPTVNGERRALDETYREIELNGIMGTPTAMNAESENCVANATMAND 437
RA +N GGG+ VA G+RR L + I G G+P + ++ S M++D
Sbjct: 18 RASMNIGGGSPVVAAEAEGQRRRLLQGL--IYGGGGGGSPVSSSSSSYGTTFRRLMSSD 74
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -2
Query: 289 APPPVFTKALGSSSAAP---RCDDPKQRLSKHTRIHSAT-EH 176
APPPV T A+ S AAP C P Q S H + H+ EH
Sbjct: 251 APPPVLTAAMPISQAAPGTNGCHAP-QVSSMHPQAHTGVMEH 291
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 536 LQFVQLRAQFQHFLVTLLKQRLKLPDP 456
L F QLR + QHF +T +LP P
Sbjct: 710 LPFFQLRLRLQHFKITAAYNDFELPQP 736
>02_05_0029 - 25194827-25195095,25195129-25197970
Length = 1036
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = -2
Query: 469 SSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPIIPFNSISLYVSSNARLS 317
SS + ++GC S + L F+D + + I F++I ++V +N+ LS
Sbjct: 406 SSALSVLQGCPSLTSLVLTKNFNDGKALPM-TGIDGFHNIQVFVIANSHLS 455
>06_03_0143 + 17215975-17216745
Length = 256
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 403 SDSAFIAVGVPIIPFNSISLYVSSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDP 224
+++ V +P++P ++ ++ L L GA++ PPP ++AA CD P
Sbjct: 148 AEAVAAVVDLPVLPDDAEECAGAAERAL--LAAGASLPPPPPPSQVGANGTTAAAACDVP 205
>05_03_0657 +
16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +3
Query: 231 SQRGAADDEPRALVNTGGGAL-----TVAPTVNGERRALD 335
+QRG++ + PR L+N G TVAPT G R D
Sbjct: 860 NQRGSSKNSPRQLINIVSGRWSPFHDTVAPTTGGSPREND 899
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 288 ALTVAPTVNGERRALDETYRE 350
+L ++P NGE+R DE YRE
Sbjct: 406 SLAISPERNGEQRRRDERYRE 426
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 565 RAYCWYGNTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAI 425
+A +Y + L E SS+IS CLS A + S + C+SF +
Sbjct: 282 KAVAYYYHGLVLDKGNEASSHISAVCCLSAADDLVADSKRACLSFCL 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,416
Number of Sequences: 37544
Number of extensions: 318196
Number of successful extensions: 1180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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