Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f04f
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    32   0.28 
SB_16593| Best HMM Match : rve (HMM E-Value=9.3e-16)                   30   1.1  
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)                  28   4.6  
SB_52356| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_50846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_23285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            28   6.1  
SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)                28   6.1  
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    27   8.1  
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)                  27   8.1  
SB_43020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_4109| Best HMM Match : 7tm_1 (HMM E-Value=8.89965e-42)              27   8.1  

>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
 Frame = -2

Query: 547  GNTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGCMSFAIVALATQFSDSAFIAVGVPI 368
            G+TL S S+   S   SWS   S+  S   R      S +     T  S S+F ++ +  
Sbjct: 848  GSTLASQSTASASHIPSWSSLSSSFPSLSSRLSSASSSASPPGTTTSSSSSSFPSLSLSQ 907

Query: 367  IPFNSISL--YVSSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDPKQRL 212
               +S S    +SS+A  S L+  +   AP  + T+ L +SS +     P+Q +
Sbjct: 908  HDPHSSSTTEEMSSSALTSSLSPSSPHGAPLSLSTEELSTSSLSITSSLPQQSM 961


>SB_16593| Best HMM Match : rve (HMM E-Value=9.3e-16)
          Length = 783

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 379 GVPIIPFNSISLY-VSSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDPKQRLSKH 203
           G P++ + + S +  +  AR S + +  T++  PPV T+ALG +   P     KQ+LS  
Sbjct: 440 GQPVLYYTAYSKHGFTPKARESDIPLVVTLTVVPPVDTEALGMTLGVPL----KQKLSAR 495

Query: 202 TR 197
            R
Sbjct: 496 ER 497


>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 334 SNARLSPLTVGATVSAPPPVFTKALGSSSAAP 239
           S    SP+T+  T+   PP + +A+ SSS  P
Sbjct: 207 STLERSPVTIADTIDITPPSYEEAVQSSSEEP 238


>SB_52356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 337 SSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDPKQRLSKHTR 197
           S+ AR S + +  T++  PPV T+ALG +   P     KQ+LS   R
Sbjct: 139 SAEARESDIPLVVTLTVVPPVDTEALGMTLGVPL----KQKLSATER 181


>SB_50846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 337 SSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDPKQRLSKHTR 197
           S+ AR S + +  T++  PPV T+ALG +   P     KQ+LS   R
Sbjct: 109 SAEARESDIPLVVTLTVVPPVDTEALGMTLGVPL----KQKLSATER 151


>SB_23285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 337 SSNARLSPLTVGATVSAPPPVFTKALGSSSAAPRCDDPKQRLSKHTR 197
           S+ AR S + +  T++  PPV T+ALG +   P     KQ+LS   R
Sbjct: 133 SAEARESDIPLVVTLTVVPPVDTEALGMTLGVPL----KQKLSATER 175


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 349 SLYVSSNARLSPLT----VGATVSAPPPV-FTKALGSSSAAPRCDDPKQR 215
           S++  S+A  +P T    V AT+SAPPP+  T    + S+A  C  P  R
Sbjct: 566 SVFAPSSAVPTPATAPPPVAATLSAPPPLDSTSGSSTISSATICFGPTNR 615


>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -2

Query: 412 TQFSDSAFIAV-GVP----IIPFNSISLYVSSNARLSPLTVGATVSAPPPVFTKALGSSS 248
           TQF+ SA   + G P     +P+       SS+  LSPL+  +  SA PP  +   G   
Sbjct: 91  TQFNTSAIAMILGEPGPSFRLPYGDSESGYSSDEALSPLSAASYRSASPPYTSNDAGMQG 150

Query: 247 AAP 239
             P
Sbjct: 151 GIP 153


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 521 LRAQFQHFLVTLLKQRLKLPDPFD*GLHVIRHRCIGNAILRL 396
           L+  F  FL  + + R+ +PD    G+  ++   IGNAI+ +
Sbjct: 93  LKYAFTEFLEKIDENRVPIPDLIPVGMRKMKELGIGNAIIEI 134


>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
          Length = 452

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 451 SNGSGSLRRCLSNVTRKCWN--CARSWTNCRACSRTSST 561
           +NG+  L+R + +  R+C+N  C  S  N    S T+ST
Sbjct: 56  NNGAKYLKRAVISTARECYNLCCRHSSCNLAMISYTNST 94


>SB_43020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 116 CTYSSVTVRGQSSQGKRRICVGSVCASRAARS 21
           C  + V VRG   +G++       C+SR+ RS
Sbjct: 21  CVSAQVKVRGTGERGRKESLPADYCSSRSLRS 52


>SB_4109| Best HMM Match : 7tm_1 (HMM E-Value=8.89965e-42)
          Length = 331

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 406 IALPMQRWRMTCSP*SNGSGSLRRCLSNVTRKCWNCARSWTN 531
           +A+ ++R+     P S G+  LR+ +  +   CW  A +W +
Sbjct: 102 LAIAVERYYAVAKPHSYGARFLRKRVKLMVVVCWTVALAWNS 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,903
Number of Sequences: 59808
Number of extensions: 348543
Number of successful extensions: 1171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)