Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f04f
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical ... 34 0.082
AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical... 31 0.58
AC006712-11|AAK39327.2| 308|Caenorhabditis elegans Hypothetical... 29 1.8
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki... 29 3.1
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr... 29 3.1
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z46343-2|CAA86457.1| 253|Caenorhabditis elegans Hypothetical pr... 28 5.4
>AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical
protein ZK105.5 protein.
Length = 569
Score = 33.9 bits (74), Expect = 0.082
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 53 PHISCASPVNSDRELLPNYKCIN 121
P I+C S + +++E LP YKC+N
Sbjct: 485 PFIACLSKIRANKEALPKYKCVN 507
>AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical
protein F19B10.10 protein.
Length = 639
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 409 QFSDSAFIAVGVPIIPFNSISLYVSSN 329
Q++DS+F+A G+ I + ISL SSN
Sbjct: 305 QYTDSSFMATGIDTIDLSDISLVASSN 331
>AC006712-11|AAK39327.2| 308|Caenorhabditis elegans Hypothetical
protein Y119C1B.10 protein.
Length = 308
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 371 GDSYSYECGVGELRCQCNDG 430
GD+Y + CG+G +C+DG
Sbjct: 278 GDNYQFSCGIGHHEEKCSDG 297
>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical protein
F46C3.1 protein.
Length = 1077
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 SSQRGAADDEPRALVNTGGGALTVAPTVNGERRALDETYREIE-LNGIMGTPTAMNAESE 404
SS + DDEP+ ++ GG V + + + A+ ET +EI + + AM E+E
Sbjct: 803 SSSGSSIDDEPKKYNSSSGGIEFVDGSDDVDNEAVKETKKEIAVIEELSIHNRAMIVETE 862
Query: 405 NCVANATMAND 437
N ND
Sbjct: 863 NQELEVRERND 873
>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical protein
F46C3.1 protein.
Length = 1077
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 SSQRGAADDEPRALVNTGGGALTVAPTVNGERRALDETYREIE-LNGIMGTPTAMNAESE 404
SS + DDEP+ ++ GG V + + + A+ ET +EI + + AM E+E
Sbjct: 803 SSSGSSIDDEPKKYNSSSGGIEFVDGSDDVDNEAVKETKKEIAVIEELSIHNRAMIVETE 862
Query: 405 NCVANATMAND 437
N ND
Sbjct: 863 NQELEVRERND 873
>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha kinase
protein.
Length = 1077
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 SSQRGAADDEPRALVNTGGGALTVAPTVNGERRALDETYREIE-LNGIMGTPTAMNAESE 404
SS + DDEP+ ++ GG V + + + A+ ET +EI + + AM E+E
Sbjct: 803 SSSGSSIDDEPKKYNSSSGGIEFVDGSDDVDNEAVKETKKEIAVIEELSIHNRAMIVETE 862
Query: 405 NCVANATMAND 437
N ND
Sbjct: 863 NQELEVRERND 873
>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
translation initiationfactor 2 alpha kinase PEK protein.
Length = 1077
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 228 SSQRGAADDEPRALVNTGGGALTVAPTVNGERRALDETYREIE-LNGIMGTPTAMNAESE 404
SS + DDEP+ ++ GG V + + + A+ ET +EI + + AM E+E
Sbjct: 803 SSSGSSIDDEPKKYNSSSGGIEFVDGSDDVDNEAVKETKKEIAVIEELSIHNRAMIVETE 862
Query: 405 NCVANATMAND 437
N ND
Sbjct: 863 NQELEVRERND 873
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 424 RWRMTCSP*SNGSGSLRRCLSNVTRKCWNCARSWTNCRACSRTSST 561
RW +T S N + +L L C + WTNC S T+S+
Sbjct: 247 RWILTTSDSWNKANALINLLYCTPNACPQQSMLWTNCSNLSTTTSS 292
>Z46343-2|CAA86457.1| 253|Caenorhabditis elegans Hypothetical
protein T23F11.2 protein.
Length = 253
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -2
Query: 556 CWYGNTLCSLSSCERSSNISWSRCLSNASSSLIRSIKGC 440
CW+ N +C ++ SR S +S+ +S K C
Sbjct: 187 CWFSNYICGTEKQPEKQSMRSSRRSSRSSNHSAKSSKAC 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,955
Number of Sequences: 27780
Number of extensions: 243126
Number of successful extensions: 855
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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