Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11f04f
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.93 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 342 YREIELNGIMGTPTAMNAESE 404
           +  +ELN ++GTP A N  +E
Sbjct: 36  FSPMELNALVGTPAAPNMPAE 56


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 352 ISLYVSSNARLSPLTVGATVSAPPPVFTKAL 260
           +SL V++   ++  T G   S PP  +TKA+
Sbjct: 274 VSLGVTTLLTMATQTSGINASLPPVSYTKAI 304


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 352 ISLYVSSNARLSPLTVGATVSAPPPVFTKAL 260
           +SL V++   ++  T G   S PP  +TKA+
Sbjct: 274 VSLGVTTLLTMATQTSGINASLPPVSYTKAI 304


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 436 SFAIVALATQFSDSAFIAVGVPIIPFNSISLYVSSNARLSPLTVGATVSAPPPVFTKAL 260
           +FA   L    S  +F  +G+  IP   ++L V+S   L  +  G     PP  + KAL
Sbjct: 206 TFAPSTLVVMLSWFSFW-LGLDAIP-GRVALLVTSMLTLVTMFTGLKSDIPPVAYVKAL 262


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 486 QRDQEMLELRSQLDK 530
           +RD E+ ELRS LDK
Sbjct: 27  RRDAEIQELRSHLDK 41


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 550 YGNTLCSLSSCERSSNISWSRCLSNASSS 464
           Y NT CS S  +RSS  S SR  + + SS
Sbjct: 17  YSNT-CSNSQSQRSSGSSISRNSNRSESS 44


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 550 YGNTLCSLSSCERSSNISWSRCLSNASSS 464
           Y NT CS S  +RSS  S SR  + + SS
Sbjct: 17  YSNT-CSNSQSQRSSGSSISRNSNRSESS 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,752
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)