Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11f03r
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun... 123 3e-29
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 35 0.015
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 29 0.55
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 29 0.96
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 27 2.2
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 2.9
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 5.1
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 26 6.8
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 26 6.8
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 25 9.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 9.0
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 25 9.0
>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 412
Score = 123 bits (296), Expect = 3e-29
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Frame = -2
Query: 749 ISLIYGTPRAATVRARTSLK-LWGLDRDSYRRILMGSTIRKRRMYDEFLSRVSILESLEK 573
++L+Y PRAA+V ++T ++ LDR S+RRI+ + R+R +Y+ L V IL SL+K
Sbjct: 225 LALMYNAPRAASVVSKTPNNVIYALDRTSFRRIVFENAYRQRMLYESLLEEVPILSSLDK 284
Query: 572 WERLTVADALEPVSFNDSETIVRQGEPGNDFYIIVEGTAVVLQQRGAGGEAVEVGRLGPS 393
++R +ADAL+ V + ++RQG+ GN FY+I +G A V++ G+ V V L
Sbjct: 285 YQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEVVK----NGKGVVV-TLTKG 339
Query: 392 DYFGEIALLLDRPRAATVRAHGPLKCVKLDRARFERVLGLCADILK 255
DYFGE+AL+ + R ATV+A LK D+ F R+LG D+++
Sbjct: 340 DYFGELALIHETVRNATVQAKTRLKLATFDKPTFNRLLGNAIDLMR 385
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Frame = -2
Query: 512 IVRQGEPGNDFYIIVEGTAVVLQQRG---------AGGEAVEVGRLGPSDYFGEIALLLD 360
++ QG G+ FYI+ +G V ++ + G + + P +YFGE+AL+ +
Sbjct: 171 VIVQGAVGDYFYIVEQGEFDVYKRPELNITPEEVLSSGYGNYITTISPGEYFGELALMYN 230
Query: 359 RPRAATVRAHGPLKCV-KLDRARFERVL 279
PRAA+V + P + LDR F R++
Sbjct: 231 APRAASVVSKTPNNVIYALDRTSFRRIV 258
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -2
Query: 677 DRDSYRRILMGSTIRKRRMYDEFLSRVSILESLEKWERLTVADALEPVSFNDSETIVRQG 498
D DS +++ I D + SI+ S +K L A +E + + TIVRQG
Sbjct: 488 DSDSLKKVDFLGQIAMMSATDREEVKSSIVVSTKKSTILEFAKEIEIIFYKKGTTIVRQG 547
Query: 497 EPGNDFYIIVEG 462
+ + Y I++G
Sbjct: 548 DHADGLYYIIDG 559
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +1
Query: 574 FSK-LSNIETLERNSSYILRFLIVEPM----RIRR*ESRSSPHNLREVRARTVAA 723
FSK +SN+ET+++N SY+L V P+ RI + + +L+ R R +A+
Sbjct: 716 FSKDISNLETIQQNCSYVLILCPVHPIVWKGRIEKVDVPDFSVDLKTNRVRIIAS 770
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 651 ENSTVRVTIQSPQLKGGASANRGGSR 728
E +T VTIQSPQL A GGSR
Sbjct: 348 ETTTAGVTIQSPQLDINTVAAGGGSR 373
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 668 SYRRILMGSTIRKRRMYDEFLSRVSILESLEK 573
S R +++ S IR +DE LSR+ + E L K
Sbjct: 363 SPREVVVDSAIRDLAYHDEILSRMKLNEQLNK 394
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +1
Query: 508 TMVSLSLKDTGSNASATVSRSHFSKLSNIETLERNSSYILRFLIVEPMRIRR*ESRSSPH 687
T V + + SNA +++ + +ETL+++SS IL ++ + ES SSP
Sbjct: 530 TFVKIKKFEYESNALLVSGTGYYNVV--LETLKKSSSNILIMPYLKDYKTIENESSSSPL 587
Query: 688 NLREVR 705
+L +R
Sbjct: 588 SLSSIR 593
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 289 KEFLVSVPTFSRETSPNTTALYRFRY 212
K+FL PTF +E SP++ L +
Sbjct: 659 KKFLYDEPTFKKEASPHSDVLKNLHF 684
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 344 TVRAHGPLKCVKLDRARFERVLGLCA 267
T+ GP K KLD ++ R++ + A
Sbjct: 127 TIELRGPFKTTKLDCTKYPRIVAIVA 152
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.8
Identities = 22/95 (23%), Positives = 32/95 (33%)
Frame = -3
Query: 463 ARRWYCNKEAREARQWKWGG*ALQTTSARSRCCWTGREPPPCALTARSNASSSTVPDLKE 284
A+ E E R +K + + C GRE A A T D +
Sbjct: 100 AKTGVSRSEQIEGRSFKLKRLTPKEQEGMRKVCRLGREVLDAAAAA---VRPGTTTDELD 156
Query: 283 FLVSVPTFSRETSPNTTALYRFRYKSCDETSVILC 179
+V R+ P+T Y F C + I+C
Sbjct: 157 SIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIIC 191
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 761 VALRISLIYGTPRAATVRARTSLKLWGLDRDSYRRILM 648
+ L + + G P A+ + +LW D Y+R+LM
Sbjct: 130 ILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLM 167
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 273 ETKNSFKSGTVELDAFERA 329
ETKN F+ V+LDAF+ A
Sbjct: 483 ETKNFFEEHGVDLDAFKNA 501
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 210 LYRKRYKAVVLGDVSLENVGTETKNSFKSGTVELDAFERAVS 335
L+++ + +V L L TETK + LDA R +S
Sbjct: 75 LFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVIS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,828
Number of Sequences: 5004
Number of extensions: 55416
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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